Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Jarkko Salojärvi; Olli-Pekka Smolander; Kaisa Nieminen; Sitaram Rajaraman; Omid Safronov; Pezhman Safdari; Airi Lamminmäki; Juha Immanen; Tianying Lan; Jaakko Tanskanen; Pasi Rastas; Ali Amiryousefi; Balamuralikrishna Jayaprakash; Juhana I. Kammonen; Risto Hagqvist; Gugan Eswaran; Viivi Helena Ahonen; Juan Alonso Serra; Fred O. Asiegbu; Juan de Dios Barajas-Lopez; Daniel Blande; Olga Blokhina; Tiina Blomster; Suvi Broholm; Mikael Brosche; Fuqiang Cui; Chris Dardick; Sanna E. Ehonen; Paula Elomaa; Sacha Escamez; Kurt V. Fagerstedt; Hiroaki Fujii; Adrien Gauthier; Peter J. Gollan; Pauliina Halimaa; Pekka I. Heino; Kristiina Himanen; Courtney Hollender; Saijaliisa Kangasjarvi; Leila Kauppinen; Colin T. Kelleher; Sari Kontunen-Soppela; J. Patrik Koskinen; Andriy Kovalchuk; Sirpa O. Karenlampi; Anna K. Kärkönen; Kean-Jin Lim; Johanna Leppälä; Lee Macpherson; Juha Mikola; Katriina Mouhu; Ari Pekka Mähönen; Ulo Niinemets; Elina Oksanen; Kirk Overmyer; E. Tapio Palva; Leila Pazouki; Ville Pennanen; Tuula Puhakainen; Peter Poczai; Boy J. H. M. Possen; Matleena Punkkinen; Moona M. Rahikainen; Matti Rousi; Raili Ruonala; Christiaan van der Schoot; Alexey Shapiguzov; Maija Sierla; Timo P. Sipilä; Suvi Sutela; Teemu H. Teeri; Arja I. Tervahauta; Aleksia Vaattovaara; Jorma Vahala; Lidia Vetchinnikova; Annikki Welling; Michael Wrzaczek; Enjun Xu; Lars G. Paulin; Alan H. Schulman; Martin Lascoux; Victor A. Albert; Petri Auvinen; Ykä Helariutta; Jaakko Kangasjarvi

doi:10.1038/ng.3862

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Jarkko Salojärvi, Olli-Pekka Smolander, Kaisa Nieminen, Sitaram Rajaraman, Omid Safronov, Pezhman Safdari, Airi Lamminmäki, Juha Immanen, Tianying Lan, Jaakko Tanskanen, Pasi Rastas, Ali Amiryousefi, Balamuralikrishna Jayaprakash, Juhana I. Kammonen, Risto Hagqvist, Gugan Eswaran, Viivi Helena Ahonen, Juan Alonso Serra, Fred O. Asiegbu, Juan de Dios Barajas-LopezDaniel Blande, Olga Blokhina, Tiina Blomster, Suvi Broholm, Mikael Brosche, Fuqiang Cui, Chris Dardick, Sanna E. Ehonen, Paula Elomaa, Sacha Escamez, Kurt V. Fagerstedt, Hiroaki Fujii, Adrien Gauthier, Peter J. Gollan, Pauliina Halimaa, Pekka I. Heino, Kristiina Himanen, Courtney Hollender, Saijaliisa Kangasjarvi, Leila Kauppinen, Colin T. Kelleher, Sari Kontunen-Soppela, J. Patrik Koskinen, Andriy Kovalchuk, Sirpa O. Karenlampi, Anna K. Kärkönen, Kean-Jin Lim, Johanna Leppälä, Lee Macpherson, Juha Mikola, Katriina Mouhu, Ari Pekka Mähönen, Ulo Niinemets, Elina Oksanen, Kirk Overmyer, E. Tapio Palva, Leila Pazouki, Ville Pennanen, Tuula Puhakainen, Peter Poczai, Boy J. H. M. Possen, Matleena Punkkinen, Moona M. Rahikainen, Matti Rousi, Raili Ruonala, Christiaan van der Schoot, Alexey Shapiguzov, Maija Sierla, Timo P. Sipilä, Suvi Sutela, Teemu H. Teeri, Arja I. Tervahauta, Aleksia Vaattovaara, Jorma Vahala, Lidia Vetchinnikova, Annikki Welling, Michael Wrzaczek, Enjun Xu, Lars G. Paulin, Alan H. Schulman, Martin Lascoux, Victor A. Albert, Petri Auvinen, Ykä Helariutta, Jaakko Kangasjarvi

Research output: Contribution to journal › Article › Scientific › peer-review

Original language	English
Journal	Nature Genetics
Volume	49
Issue number	6
Pages (from-to)	904-912
Number of pages	12
ISSN	1061-4036
DOIs	https://doi.org/10.1038/ng.3862
Publication status	Published - 8 May 2017
MoE publication type	A1 Journal article-refereed

Fields of Science

ARABIDOPSIS-THALIANA
TRANSCRIPTION FACTOR
BETULA-PUBESCENS
CAMBIAL ACTIVITY
FLOWERING TIME
PHYTOCHROME-C
CYTOKININ
SIZE
EVOLUTION
PLANTS
1184 Genetics, developmental biology, physiology

Access to Document

10.1038/ng.3862Licence: CC BY

ng.3862Final published version, 2.65 MBLicence: CC BY

Cite this

Salojärvi, J., Smolander, O.-P., Nieminen, K., Rajaraman, S., Safronov, O., Safdari, P., Lamminmäki, A., Immanen, J., Lan, T., Tanskanen, J., Rastas, P., Amiryousefi, A., Jayaprakash, B., Kammonen, J. I., Hagqvist, R., Eswaran, G., Ahonen, V. H., Serra, J. A., Asiegbu, F. O., ... Kangasjarvi, J. (2017). Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch. Nature Genetics, 49(6), 904-912. https://doi.org/10.1038/ng.3862

@article{f5c2ab74b09546a895520437a6616368,

title = "Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch",

keywords = "ARABIDOPSIS-THALIANA, TRANSCRIPTION FACTOR, BETULA-PUBESCENS, CAMBIAL ACTIVITY, FLOWERING TIME, PHYTOCHROME-C, CYTOKININ, SIZE, EVOLUTION, PLANTS, 1184 Genetics, developmental biology, physiology",

author = "Jarkko Saloj{\"a}rvi and Olli-Pekka Smolander and Kaisa Nieminen and Sitaram Rajaraman and Omid Safronov and Pezhman Safdari and Airi Lamminm{\"a}ki and Juha Immanen and Tianying Lan and Jaakko Tanskanen and Pasi Rastas and Ali Amiryousefi and Balamuralikrishna Jayaprakash and Kammonen, \{Juhana I.\} and Risto Hagqvist and Gugan Eswaran and Ahonen, \{Viivi Helena\} and Serra, \{Juan Alonso\} and Asiegbu, \{Fred O.\} and Barajas-Lopez, \{Juan de Dios\} and Daniel Blande and Olga Blokhina and Tiina Blomster and Suvi Broholm and Mikael Brosche and Fuqiang Cui and Chris Dardick and Ehonen, \{Sanna E.\} and Paula Elomaa and Sacha Escamez and Fagerstedt, \{Kurt V.\} and Hiroaki Fujii and Adrien Gauthier and Gollan, \{Peter J.\} and Pauliina Halimaa and Heino, \{Pekka I.\} and Kristiina Himanen and Courtney Hollender and Saijaliisa Kangasjarvi and Leila Kauppinen and Kelleher, \{Colin T.\} and Sari Kontunen-Soppela and Koskinen, \{J. Patrik\} and Andriy Kovalchuk and Karenlampi, \{Sirpa O.\} and K{\"a}rk{\"o}nen, \{Anna K.\} and Kean-Jin Lim and Johanna Lepp{\"a}l{\"a} and Lee Macpherson and Juha Mikola and Katriina Mouhu and M{\"a}h{\"o}nen, \{Ari Pekka\} and Ulo Niinemets and Elina Oksanen and Kirk Overmyer and Palva, \{E. Tapio\} and Leila Pazouki and Ville Pennanen and Tuula Puhakainen and Peter Poczai and Possen, \{Boy J. H. M.\} and Matleena Punkkinen and Rahikainen, \{Moona M.\} and Matti Rousi and Raili Ruonala and \{van der Schoot\}, Christiaan and Alexey Shapiguzov and Maija Sierla and Sipil{\"a}, \{Timo P.\} and Suvi Sutela and Teeri, \{Teemu H.\} and Tervahauta, \{Arja I.\} and Aleksia Vaattovaara and Jorma Vahala and Lidia Vetchinnikova and Annikki Welling and Michael Wrzaczek and Enjun Xu and Paulin, \{Lars G.\} and Schulman, \{Alan H.\} and Martin Lascoux and Albert, \{Victor A.\} and Petri Auvinen and Yk{\"a} Helariutta and Jaakko Kangasjarvi",

year = "2017",

month = may,

day = "8",

doi = "10.1038/ng.3862",

language = "English",

volume = "49",

pages = "904--912",

journal = "Nature Genetics",

issn = "1061-4036",

publisher = "Nature Research ",

number = "6",

}

Salojärvi, J, Smolander, O-P, Nieminen, K, Rajaraman, S , Safronov, O, Safdari, P, Lamminmäki, A , Immanen, J, Lan, T, Tanskanen, J, Rastas, P, Amiryousefi, A, Jayaprakash, B, Kammonen, JI, Hagqvist, R, Eswaran, G, Ahonen, VH, Serra, JA , Asiegbu, FO, Barajas-Lopez, JDD, Blande, D, Blokhina, O, Blomster, T, Broholm, S, Brosche, M, Cui, F, Dardick, C, Ehonen, SE , Elomaa, P, Escamez, S, Fagerstedt, KV, Fujii, H, Gauthier, A, Gollan, PJ, Halimaa, P, Heino, PI, Himanen, K, Hollender, C, Kangasjarvi, S, Kauppinen, L, Kelleher, CT, Kontunen-Soppela, S, Koskinen, JP, Kovalchuk, A, Karenlampi, SO, Kärkönen, AK, Lim, K-J, Leppälä, J, Macpherson, L, Mikola, J, Mouhu, K, Mähönen, AP, Niinemets, U, Oksanen, E, Overmyer, K , Palva, ET, Pazouki, L, Pennanen, V, Puhakainen, T, Poczai, P, Possen, BJHM, Punkkinen, M, Rahikainen, MM, Rousi, M, Ruonala, R, van der Schoot, C, Shapiguzov, A , Sierla, M , Sipilä, TP, Sutela, S, Teeri, TH, Tervahauta, AI, Vaattovaara, A, Vahala, J, Vetchinnikova, L, Welling, A, Wrzaczek, M, Xu, E, Paulin, LG, Schulman, AH, Lascoux, M, Albert, VA, Auvinen, P , Helariutta, Y & Kangasjarvi, J 2017, 'Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch', Nature Genetics, vol. 49, no. 6, pp. 904-912. https://doi.org/10.1038/ng.3862

TY - JOUR

T1 - Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

AU - Salojärvi, Jarkko

AU - Smolander, Olli-Pekka

AU - Nieminen, Kaisa

AU - Rajaraman, Sitaram

AU - Safronov, Omid

AU - Safdari, Pezhman

AU - Lamminmäki, Airi

AU - Immanen, Juha

AU - Lan, Tianying

AU - Tanskanen, Jaakko

AU - Rastas, Pasi

AU - Amiryousefi, Ali

AU - Jayaprakash, Balamuralikrishna

AU - Kammonen, Juhana I.

AU - Hagqvist, Risto

AU - Eswaran, Gugan

AU - Ahonen, Viivi Helena

AU - Serra, Juan Alonso

AU - Asiegbu, Fred O.

AU - Barajas-Lopez, Juan de Dios

AU - Blande, Daniel

AU - Blokhina, Olga

AU - Blomster, Tiina

AU - Broholm, Suvi

AU - Brosche, Mikael

AU - Cui, Fuqiang

AU - Dardick, Chris

AU - Ehonen, Sanna E.

AU - Elomaa, Paula

AU - Escamez, Sacha

AU - Fagerstedt, Kurt V.

AU - Fujii, Hiroaki

AU - Gauthier, Adrien

AU - Gollan, Peter J.

AU - Halimaa, Pauliina

AU - Heino, Pekka I.

AU - Himanen, Kristiina

AU - Hollender, Courtney

AU - Kangasjarvi, Saijaliisa

AU - Kauppinen, Leila

AU - Kelleher, Colin T.

AU - Kontunen-Soppela, Sari

AU - Koskinen, J. Patrik

AU - Kovalchuk, Andriy

AU - Karenlampi, Sirpa O.

AU - Kärkönen, Anna K.

AU - Lim, Kean-Jin

AU - Leppälä, Johanna

AU - Macpherson, Lee

AU - Mikola, Juha

AU - Mouhu, Katriina

AU - Mähönen, Ari Pekka

AU - Niinemets, Ulo

AU - Oksanen, Elina

AU - Overmyer, Kirk

AU - Palva, E. Tapio

AU - Pazouki, Leila

AU - Pennanen, Ville

AU - Puhakainen, Tuula

AU - Poczai, Peter

AU - Possen, Boy J. H. M.

AU - Punkkinen, Matleena

AU - Rahikainen, Moona M.

AU - Rousi, Matti

AU - Ruonala, Raili

AU - van der Schoot, Christiaan

AU - Shapiguzov, Alexey

AU - Sierla, Maija

AU - Sipilä, Timo P.

AU - Sutela, Suvi

AU - Teeri, Teemu H.

AU - Tervahauta, Arja I.

AU - Vaattovaara, Aleksia

AU - Vahala, Jorma

AU - Vetchinnikova, Lidia

AU - Welling, Annikki

AU - Wrzaczek, Michael

AU - Xu, Enjun

AU - Paulin, Lars G.

AU - Schulman, Alan H.

AU - Lascoux, Martin

AU - Albert, Victor A.

AU - Auvinen, Petri

AU - Helariutta, Ykä

AU - Kangasjarvi, Jaakko

PY - 2017/5/8

Y1 - 2017/5/8

KW - ARABIDOPSIS-THALIANA

KW - TRANSCRIPTION FACTOR

KW - BETULA-PUBESCENS

KW - CAMBIAL ACTIVITY

KW - FLOWERING TIME

KW - PHYTOCHROME-C

KW - CYTOKININ

KW - SIZE

KW - EVOLUTION

KW - PLANTS

KW - 1184 Genetics, developmental biology, physiology

UR - https://www.scopus.com/pages/publications/85019662133

U2 - 10.1038/ng.3862

DO - 10.1038/ng.3862

M3 - Article

SN - 1061-4036

VL - 49

SP - 904

EP - 912

JO - Nature Genetics

JF - Nature Genetics

IS - 6

ER -

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Fields of Science

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Other files and links

LUOMUS The Finnish Museum of Natural History

The Finnish Biodiversity Information Centre (LS-RIA/ HUBCRI)

Viikki Research Farm; including Muddusjärvi and Suitia resources (LS-RIA/ Research Stations)

Cite this

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Fields of Science

Access to Document

Other files and links

Equipment

LUOMUS The Finnish Museum of Natural History

The Finnish Biodiversity Information Centre (LS-RIA/ HUBCRI)

Viikki Research Farm; including Muddusjärvi and Suitia resources (LS-RIA/ Research Stations)

Cite this