PANINI: Pangenome Neighbour Identification for Bacterial Populations

Khalil Abudahab, Joaquin M. Prada, Zhirong Yang, Stephen D. Bentley, Nicholas J. Croucher, Jukka Corander, David M. Aanensen

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
Article number000220
JournalMicrobial Genomics
Volume5
Issue number4
Number of pages10
ISSN2057-5858
DOIs
Publication statusPublished - Apr 2019
MoE publication typeA1 Journal article-refereed

Fields of Science

  • pangenome
  • microbial population genomics
  • machine learning
  • web application
  • STREPTOCOCCUS-PNEUMONIAE
  • EVOLUTION
  • 111 Mathematics
  • 318 Medical biotechnology

Cite this

Abudahab, K., Prada, J. M., Yang, Z., Bentley, S. D., Croucher, N. J., Corander, J., & Aanensen, D. M. (2019). PANINI: Pangenome Neighbour Identification for Bacterial Populations. Microbial Genomics, 5(4), [000220]. https://doi.org/10.1099/mgen.0.000220
Abudahab, Khalil ; Prada, Joaquin M. ; Yang, Zhirong ; Bentley, Stephen D. ; Croucher, Nicholas J. ; Corander, Jukka ; Aanensen, David M. / PANINI : Pangenome Neighbour Identification for Bacterial Populations. In: Microbial Genomics. 2019 ; Vol. 5, No. 4.
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title = "PANINI: Pangenome Neighbour Identification for Bacterial Populations",
keywords = "pangenome, microbial population genomics, machine learning, web application, STREPTOCOCCUS-PNEUMONIAE, EVOLUTION, 111 Mathematics, 318 Medical biotechnology",
author = "Khalil Abudahab and Prada, {Joaquin M.} and Zhirong Yang and Bentley, {Stephen D.} and Croucher, {Nicholas J.} and Jukka Corander and Aanensen, {David M.}",
year = "2019",
month = "4",
doi = "10.1099/mgen.0.000220",
language = "English",
volume = "5",
journal = "Microbial Genomics",
issn = "2057-5858",
publisher = "American Society for Microbiology",
number = "4",

}

Abudahab, K, Prada, JM, Yang, Z, Bentley, SD, Croucher, NJ, Corander, J & Aanensen, DM 2019, 'PANINI: Pangenome Neighbour Identification for Bacterial Populations', Microbial Genomics, vol. 5, no. 4, 000220. https://doi.org/10.1099/mgen.0.000220

PANINI : Pangenome Neighbour Identification for Bacterial Populations. / Abudahab, Khalil; Prada, Joaquin M.; Yang, Zhirong; Bentley, Stephen D.; Croucher, Nicholas J.; Corander, Jukka; Aanensen, David M.

In: Microbial Genomics, Vol. 5, No. 4, 000220, 04.2019.

Research output: Contribution to journalArticleScientificpeer-review

TY - JOUR

T1 - PANINI

T2 - Pangenome Neighbour Identification for Bacterial Populations

AU - Abudahab, Khalil

AU - Prada, Joaquin M.

AU - Yang, Zhirong

AU - Bentley, Stephen D.

AU - Croucher, Nicholas J.

AU - Corander, Jukka

AU - Aanensen, David M.

PY - 2019/4

Y1 - 2019/4

KW - pangenome

KW - microbial population genomics

KW - machine learning

KW - web application

KW - STREPTOCOCCUS-PNEUMONIAE

KW - EVOLUTION

KW - 111 Mathematics

KW - 318 Medical biotechnology

U2 - 10.1099/mgen.0.000220

DO - 10.1099/mgen.0.000220

M3 - Article

VL - 5

JO - Microbial Genomics

JF - Microbial Genomics

SN - 2057-5858

IS - 4

M1 - 000220

ER -