ShapeMetrics: a userfriendly pipeline for 3D cell segmentation and spatial tissue analysis

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
JournalDevelopmental Biology
Volume462
Issue number1
Pages (from-to)7-19
Number of pages13
ISSN0012-1606
DOIs
Publication statusPublished - 1 Jun 2020
MoE publication typeA1 Journal article-refereed

Fields of Science

  • 1182 Biochemistry, cell and molecular biology
  • ShapeMetrics
  • 3D cell segmentation
  • spatial localization
  • cell shape
  • single cell analysis
  • user-friendly code
  • tissue analysis
  • cell segmentation pipeline
  • cell morphology analysis
  • cell size
  • MATLAB
  • Ilastik
  • Tissue analysis
  • Single cell analysis
  • Spatial localization
  • Cell segmentation pipeline
  • EMBRYO
  • Cell shape
  • Cell size
  • User-friendly code
  • Cell morphology analysis

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