Simulating solar-induced chlorophyll fluorescence in a boreal forest stand reconstructed from terrestrial laser scanning measurements

Weiwei Liu, Jon Atherton, Matti Mõttus, Jean-Philippe Gastellu-Etchegorry, Zbyněk Malenovský, Pasi Raumonen, Markku Åkerblom, Raisa Mäkipää, Albert Porcar-Castell

Research output: Contribution to journalArticleScientificpeer-review

Abstract

Solar-induced chlorophyll fluorescence (SIF) has been shown to be a suitable remote sensing proxy of photosynthesis at multiple scales. However, the relationship between fluorescence and photosynthesis observed at the leaf level cannot be directly applied to the interpretation of retrieved SIF due to the impact of canopy structure. We carried out a SIF modelling study for a heterogeneous forest canopy considering the effect of canopy structure in the Discrete Anisotropic Radiative Transfer (DART) model. A 3D forest simulation scene consisting of realistic trees and understory, including multi-scale clumping at branch and canopy level, was constructed from terrestrial laser scanning data using the combined model TreeQSM and FaNNI for woody structure and leaf insertion, respectively. Next, using empirical data and a realistic range of leaf-level biochemical and physiological parameters, we conducted a local sensitivity analysis to demonstrate the potential of the approach for assessing the impact of structural, biochemical and physiological factors on top of canopy (TOC) SIF. The analysis gave insight into the factors that drive the intensity and spectral properties of TOC SIF in heterogeneous boreal forest canopies. DART simulated red TOC fluorescence was found to be less affected by biochemical factors such as chlorophyll and dry matter contents or the senescent factor than far-red fluorescence. In contrast, canopy structural factors such as overstory leaf area index (LAI), leaf angle distribution and fractional cover had a substantial and comparable impact across all SIF wavelengths, with the exception of understory LAI that affected predominantly far-red fluorescence. Finally, variations in the fluorescence quantum efficiency (Fqe) of photosystem II affected all TOC SIF wavelengths. Our results also revealed that not only canopy structural factors but also understory fluorescence should be considered in the interpretation of tower, airborne and satellite SIF datasets, especially when acquired in the (near-) nadir viewing direction and for forests with open canopies. We suggest that the modelling strategy introduced in this study, coupled with the increasing availability of TLS and other 3D data sources, can be applied to resolve the interplay between physiological, biochemical and structural factors affecting SIF across ecosystems and independently of canopy complexity, paving the way for future SIF-based 3D photosynthesis models.
Original languageEnglish
JournalRemote Sensing of Environment
ISSN0034-4257
DOIs
Publication statusAccepted/In press - 2 Jul 2019
MoE publication typeA1 Journal article-refereed

Fields of Science

  • Boreal forest
  • Silver birch
  • LiDAR
  • DART
  • Solar-induced chlorophyll fluorescence
  • Red SIF
  • Far-red SIF
  • Understory
  • TreeQSM
  • FaNNI
  • 4112 Forestry
  • 1181 Ecology, evolutionary biology

Cite this

@article{6b872db7e9e042ccbd1cf96448228f67,
title = "Simulating solar-induced chlorophyll fluorescence in a boreal forest stand reconstructed from terrestrial laser scanning measurements",
abstract = "Solar-induced chlorophyll fluorescence (SIF) has been shown to be a suitable remote sensing proxy of photosynthesis at multiple scales. However, the relationship between fluorescence and photosynthesis observed at the leaf level cannot be directly applied to the interpretation of retrieved SIF due to the impact of canopy structure. We carried out a SIF modelling study for a heterogeneous forest canopy considering the effect of canopy structure in the Discrete Anisotropic Radiative Transfer (DART) model. A 3D forest simulation scene consisting of realistic trees and understory, including multi-scale clumping at branch and canopy level, was constructed from terrestrial laser scanning data using the combined model TreeQSM and FaNNI for woody structure and leaf insertion, respectively. Next, using empirical data and a realistic range of leaf-level biochemical and physiological parameters, we conducted a local sensitivity analysis to demonstrate the potential of the approach for assessing the impact of structural, biochemical and physiological factors on top of canopy (TOC) SIF. The analysis gave insight into the factors that drive the intensity and spectral properties of TOC SIF in heterogeneous boreal forest canopies. DART simulated red TOC fluorescence was found to be less affected by biochemical factors such as chlorophyll and dry matter contents or the senescent factor than far-red fluorescence. In contrast, canopy structural factors such as overstory leaf area index (LAI), leaf angle distribution and fractional cover had a substantial and comparable impact across all SIF wavelengths, with the exception of understory LAI that affected predominantly far-red fluorescence. Finally, variations in the fluorescence quantum efficiency (Fqe) of photosystem II affected all TOC SIF wavelengths. Our results also revealed that not only canopy structural factors but also understory fluorescence should be considered in the interpretation of tower, airborne and satellite SIF datasets, especially when acquired in the (near-) nadir viewing direction and for forests with open canopies. We suggest that the modelling strategy introduced in this study, coupled with the increasing availability of TLS and other 3D data sources, can be applied to resolve the interplay between physiological, biochemical and structural factors affecting SIF across ecosystems and independently of canopy complexity, paving the way for future SIF-based 3D photosynthesis models.",
keywords = "Boreal forest, Silver birch, LiDAR, DART, Solar-induced chlorophyll fluorescence, Red SIF, Far-red SIF, Understory, TreeQSM, FaNNI, 4112 Forestry, 1181 Ecology, evolutionary biology",
author = "Weiwei Liu and Jon Atherton and Matti M{\~o}ttus and Jean-Philippe Gastellu-Etchegorry and Zbyněk Malenovsk{\'y} and Pasi Raumonen and Markku {\AA}kerblom and Raisa M{\"a}kip{\"a}{\"a} and Albert Porcar-Castell",
year = "2019",
month = "7",
day = "2",
doi = "10.1016/j.rse.2019.111274",
language = "English",
journal = "Remote Sensing of Environment",
issn = "0034-4257",
publisher = "EXCERPTA MEDICA INC-ELSEVIER SCIENCE INC",

}

Simulating solar-induced chlorophyll fluorescence in a boreal forest stand reconstructed from terrestrial laser scanning measurements. / Liu, Weiwei; Atherton, Jon; Mõttus, Matti; Gastellu-Etchegorry, Jean-Philippe; Malenovský, Zbyněk; Raumonen, Pasi; Åkerblom, Markku; Mäkipää, Raisa; Porcar-Castell, Albert.

In: Remote Sensing of Environment, 02.07.2019.

Research output: Contribution to journalArticleScientificpeer-review

TY - JOUR

T1 - Simulating solar-induced chlorophyll fluorescence in a boreal forest stand reconstructed from terrestrial laser scanning measurements

AU - Liu, Weiwei

AU - Atherton, Jon

AU - Mõttus, Matti

AU - Gastellu-Etchegorry, Jean-Philippe

AU - Malenovský, Zbyněk

AU - Raumonen, Pasi

AU - Åkerblom, Markku

AU - Mäkipää, Raisa

AU - Porcar-Castell, Albert

PY - 2019/7/2

Y1 - 2019/7/2

N2 - Solar-induced chlorophyll fluorescence (SIF) has been shown to be a suitable remote sensing proxy of photosynthesis at multiple scales. However, the relationship between fluorescence and photosynthesis observed at the leaf level cannot be directly applied to the interpretation of retrieved SIF due to the impact of canopy structure. We carried out a SIF modelling study for a heterogeneous forest canopy considering the effect of canopy structure in the Discrete Anisotropic Radiative Transfer (DART) model. A 3D forest simulation scene consisting of realistic trees and understory, including multi-scale clumping at branch and canopy level, was constructed from terrestrial laser scanning data using the combined model TreeQSM and FaNNI for woody structure and leaf insertion, respectively. Next, using empirical data and a realistic range of leaf-level biochemical and physiological parameters, we conducted a local sensitivity analysis to demonstrate the potential of the approach for assessing the impact of structural, biochemical and physiological factors on top of canopy (TOC) SIF. The analysis gave insight into the factors that drive the intensity and spectral properties of TOC SIF in heterogeneous boreal forest canopies. DART simulated red TOC fluorescence was found to be less affected by biochemical factors such as chlorophyll and dry matter contents or the senescent factor than far-red fluorescence. In contrast, canopy structural factors such as overstory leaf area index (LAI), leaf angle distribution and fractional cover had a substantial and comparable impact across all SIF wavelengths, with the exception of understory LAI that affected predominantly far-red fluorescence. Finally, variations in the fluorescence quantum efficiency (Fqe) of photosystem II affected all TOC SIF wavelengths. Our results also revealed that not only canopy structural factors but also understory fluorescence should be considered in the interpretation of tower, airborne and satellite SIF datasets, especially when acquired in the (near-) nadir viewing direction and for forests with open canopies. We suggest that the modelling strategy introduced in this study, coupled with the increasing availability of TLS and other 3D data sources, can be applied to resolve the interplay between physiological, biochemical and structural factors affecting SIF across ecosystems and independently of canopy complexity, paving the way for future SIF-based 3D photosynthesis models.

AB - Solar-induced chlorophyll fluorescence (SIF) has been shown to be a suitable remote sensing proxy of photosynthesis at multiple scales. However, the relationship between fluorescence and photosynthesis observed at the leaf level cannot be directly applied to the interpretation of retrieved SIF due to the impact of canopy structure. We carried out a SIF modelling study for a heterogeneous forest canopy considering the effect of canopy structure in the Discrete Anisotropic Radiative Transfer (DART) model. A 3D forest simulation scene consisting of realistic trees and understory, including multi-scale clumping at branch and canopy level, was constructed from terrestrial laser scanning data using the combined model TreeQSM and FaNNI for woody structure and leaf insertion, respectively. Next, using empirical data and a realistic range of leaf-level biochemical and physiological parameters, we conducted a local sensitivity analysis to demonstrate the potential of the approach for assessing the impact of structural, biochemical and physiological factors on top of canopy (TOC) SIF. The analysis gave insight into the factors that drive the intensity and spectral properties of TOC SIF in heterogeneous boreal forest canopies. DART simulated red TOC fluorescence was found to be less affected by biochemical factors such as chlorophyll and dry matter contents or the senescent factor than far-red fluorescence. In contrast, canopy structural factors such as overstory leaf area index (LAI), leaf angle distribution and fractional cover had a substantial and comparable impact across all SIF wavelengths, with the exception of understory LAI that affected predominantly far-red fluorescence. Finally, variations in the fluorescence quantum efficiency (Fqe) of photosystem II affected all TOC SIF wavelengths. Our results also revealed that not only canopy structural factors but also understory fluorescence should be considered in the interpretation of tower, airborne and satellite SIF datasets, especially when acquired in the (near-) nadir viewing direction and for forests with open canopies. We suggest that the modelling strategy introduced in this study, coupled with the increasing availability of TLS and other 3D data sources, can be applied to resolve the interplay between physiological, biochemical and structural factors affecting SIF across ecosystems and independently of canopy complexity, paving the way for future SIF-based 3D photosynthesis models.

KW - Boreal forest

KW - Silver birch

KW - LiDAR

KW - DART

KW - Solar-induced chlorophyll fluorescence

KW - Red SIF

KW - Far-red SIF

KW - Understory

KW - TreeQSM

KW - FaNNI

KW - 4112 Forestry

KW - 1181 Ecology, evolutionary biology

U2 - 10.1016/j.rse.2019.111274

DO - 10.1016/j.rse.2019.111274

M3 - Article

JO - Remote Sensing of Environment

JF - Remote Sensing of Environment

SN - 0034-4257

ER -