SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes

Yinqiu Ji, Tea Huotari, Tomas Roslin, Niels Martin Schmidt, Jiaxin Wang, Douglas W. Yu, Otso Ovaskainen

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
JournalMolecular Ecology Resources
Number of pages12
ISSN1755-098X
DOIs
Publication statusE-pub ahead of print - 7 Aug 2019
MoE publication typeA1 Journal article-refereed

Fields of Science

  • Araneae
  • Arthropoda
  • biomonitoring
  • COI internal standard
  • community composition
  • DNA barcoding
  • insecta
  • metagenomics
  • mitogenomes
  • mitogenomics
  • COMMUNITY COMPOSITION
  • ENVIRONMENTAL DNA
  • BIODIVERSITY
  • 1182 Biochemistry, cell and molecular biology
  • 1181 Ecology, evolutionary biology
  • 1172 Environmental sciences

Cite this

@article{51ac20285018492fa75990b19dee8866,
title = "SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes",
keywords = "Araneae, Arthropoda, biomonitoring, COI internal standard, community composition, DNA barcoding, insecta, metagenomics, mitogenomes, mitogenomics, COMMUNITY COMPOSITION, ENVIRONMENTAL DNA, BIODIVERSITY, 1182 Biochemistry, cell and molecular biology, 1181 Ecology, evolutionary biology, 1172 Environmental sciences",
author = "Yinqiu Ji and Tea Huotari and Tomas Roslin and Schmidt, {Niels Martin} and Jiaxin Wang and Yu, {Douglas W.} and Otso Ovaskainen",
year = "2019",
month = "8",
day = "7",
doi = "10.1111/1755-0998.13057",
language = "English",
journal = "Molecular Ecology Resources",
issn = "1755-098X",
publisher = "Wiley",

}

SPIKEPIPE : A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes. / Ji, Yinqiu; Huotari, Tea; Roslin, Tomas; Schmidt, Niels Martin; Wang, Jiaxin; Yu, Douglas W.; Ovaskainen, Otso.

In: Molecular Ecology Resources, 07.08.2019.

Research output: Contribution to journalArticleScientificpeer-review

TY - JOUR

T1 - SPIKEPIPE

T2 - A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes

AU - Ji, Yinqiu

AU - Huotari, Tea

AU - Roslin, Tomas

AU - Schmidt, Niels Martin

AU - Wang, Jiaxin

AU - Yu, Douglas W.

AU - Ovaskainen, Otso

PY - 2019/8/7

Y1 - 2019/8/7

KW - Araneae

KW - Arthropoda

KW - biomonitoring

KW - COI internal standard

KW - community composition

KW - DNA barcoding

KW - insecta

KW - metagenomics

KW - mitogenomes

KW - mitogenomics

KW - COMMUNITY COMPOSITION

KW - ENVIRONMENTAL DNA

KW - BIODIVERSITY

KW - 1182 Biochemistry, cell and molecular biology

KW - 1181 Ecology, evolutionary biology

KW - 1172 Environmental sciences

U2 - 10.1111/1755-0998.13057

DO - 10.1111/1755-0998.13057

M3 - Article

JO - Molecular Ecology Resources

JF - Molecular Ecology Resources

SN - 1755-098X

ER -