SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes

Yinqiu Ji, Tea Huotari, Tomas Roslin, Niels Martin Schmidt, Jiaxin Wang, Douglas W. Yu, Otso Ovaskainen

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
JournalMolecular Ecology Resources
Volume20
Issue number1
Pages (from-to)256-267
Number of pages12
ISSN1755-098X
DOIs
Publication statusPublished - Jan 2020
MoE publication typeA1 Journal article-refereed

Fields of Science

  • Araneae
  • Arthropoda
  • biomonitoring
  • COI internal standard
  • community composition
  • DNA barcoding
  • insecta
  • metagenomics
  • mitogenomes
  • mitogenomics
  • COMMUNITY COMPOSITION
  • ENVIRONMENTAL DNA
  • BIODIVERSITY
  • 1182 Biochemistry, cell and molecular biology
  • 1181 Ecology, evolutionary biology
  • 1172 Environmental sciences

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