Storage and Retrieval of Highly Repetitive Sequence Collections

Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
JournalJournal of Computational Biology
Volume17
Issue number3
Pages (from-to)281-308
Number of pages28
ISSN1066-5277
DOIs
Publication statusPublished - 2010
MoE publication typeA1 Journal article-refereed

Fields of Science

  • 113 Computer and information sciences
  • comparative genomics
  • compressed data structures
  • full-text indexing
  • suffix tree

Cite this

@article{5eab8c10ecb84eefb80d0be123ffb353,
title = "Storage and Retrieval of Highly Repetitive Sequence Collections",
keywords = "113 Computer and information sciences, comparative genomics, compressed data structures, full-text indexing, suffix tree",
author = "Veli M{\"a}kinen and Gonzalo Navarro and Jouni Sir{\'e}n and Niko V{\"a}lim{\"a}ki",
year = "2010",
doi = "10.1089/cmb.2009.0169",
language = "English",
volume = "17",
pages = "281--308",
journal = "Journal of Computational Biology",
issn = "1066-5277",
publisher = "Mary Ann Liebert",
number = "3",

}

Storage and Retrieval of Highly Repetitive Sequence Collections. / Mäkinen, Veli; Navarro, Gonzalo; Sirén, Jouni; Välimäki, Niko.

In: Journal of Computational Biology, Vol. 17, No. 3, 2010, p. 281-308.

Research output: Contribution to journalArticleScientificpeer-review

TY - JOUR

T1 - Storage and Retrieval of Highly Repetitive Sequence Collections

AU - Mäkinen, Veli

AU - Navarro, Gonzalo

AU - Sirén, Jouni

AU - Välimäki, Niko

PY - 2010

Y1 - 2010

KW - 113 Computer and information sciences

KW - comparative genomics

KW - compressed data structures

KW - full-text indexing

KW - suffix tree

U2 - 10.1089/cmb.2009.0169

DO - 10.1089/cmb.2009.0169

M3 - Article

VL - 17

SP - 281

EP - 308

JO - Journal of Computational Biology

JF - Journal of Computational Biology

SN - 1066-5277

IS - 3

ER -