V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets

Martin Hartmann, Charles G Howes, Vilmar Veldre, Salome Schneider, Parag A Vaishampayan, Anthony C Yannarell, Christopher Quince, Per Johansson, K Johanna Björkroth, Kessy Abarenkov, Steven J Hallam, William W Mohn, R Henrik Nilsson

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
JournalFEMS Microbiology Letters
Volume319
Issue number2
Pages (from-to)140-145
Number of pages6
ISSN0378-1097
DOIs
Publication statusPublished - 2011
MoE publication typeA1 Journal article-refereed

Fields of Science

  • software
  • SSU rRNA gene
  • 16S sequence
  • reverse complementary
  • Hidden Markov Models
  • hmmer
  • MICROBIAL DIVERSITY
  • DATABASE
  • GENBANK
  • TOOLS
  • ARB
  • 1183 Plant biology, microbiology, virology
  • 1182 Biochemistry, cell and molecular biology
  • 413 Veterinary science

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