Vagococcus proximus sp. nov. and Vagococcus intermedius sp. nov., originating from modified atmosphere packaged broiler meat

Per Johansson; Elina Jääskeläinen; Elina Säde; Johanna Björkroth

doi:10.1099/ijsem.0.005963

Vagococcus proximus sp. nov. and Vagococcus intermedius sp. nov., originating from modified atmosphere packaged broiler meat

Per Johansson, Elina Jääskeläinen, Elina Säde, Johanna Björkroth

Research output: Contribution to journal › Article › Scientific › peer-review

Abstract

During our studies on spoilage microbiomes of modified atmosphere packaged broiler meat, we isolated three strains (PNs007T, STAA11T and STAA25) of unknown identity. In this present polyphasic taxonomy study, including genome- based analyses, we discovered that these isolates represent two novel species belonging to the genus Vagococcus. In all phylogenetic analyses, PNs007T was positioned very close to Vagococcus fessus but both the average nucleotide identity (ANI; 89.5 %) and digital DNA- DNA hybridization (dDDH; 38.3 %) values distinguished it as a novel vagococcal species. STAA11T and STAA25 were genetically highly similar (16S rRNA, ANI and dDDH 100 %). The phylogenetic position of STAA11T was adjacent to but out of the cluster containing V. fessus, Vagococcus coleopterorum and PNs007T. According to the ANI (76.2-76.4 %) and dDDH (

Original language	English
Article number	005963
Journal	International Journal of Systematic and Evolutionary Microbiology
Volume	73
Issue number	7
Number of pages	7
ISSN	1466-5026
DOIs	https://doi.org/10.1099/ijsem.0.005963
Publication status	Published - 2023
MoE publication type	A1 Journal article-refereed

Fields of Science

Map
Vagococcus intermedius sp
Vagococcus proximus sp
Modified atmosphere packaged broiler meat
Nov
11832 Microbiology and virology

Access to Document

10.1099/ijsem.0.005963Licence: CC BY

ijsem005963Final published version, 536 KBLicence: CC BY

Cite this

@article{da56110a98fa4932b3776f9a6b33b648,

title = "Vagococcus proximus sp. nov. and Vagococcus intermedius sp. nov., originating from modified atmosphere packaged broiler meat",

abstract = "During our studies on spoilage microbiomes of modified atmosphere packaged broiler meat, we isolated three strains (PNs007T, STAA11T and STAA25) of unknown identity. In this present polyphasic taxonomy study, including genome- based analyses, we discovered that these isolates represent two novel species belonging to the genus Vagococcus. In all phylogenetic analyses, PNs007T was positioned very close to Vagococcus fessus but both the average nucleotide identity (ANI; 89.5 %) and digital DNA- DNA hybridization (dDDH; 38.3 %) values distinguished it as a novel vagococcal species. STAA11T and STAA25 were genetically highly similar (16S rRNA, ANI and dDDH 100 %). The phylogenetic position of STAA11T was adjacent to but out of the cluster containing V. fessus, Vagococcus coleopterorum and PNs007T. According to the ANI (76.2-76.4 %) and dDDH (",

keywords = "Map, Vagococcus intermedius sp, Vagococcus proximus sp, Modified atmosphere packaged broiler meat, Nov, 11832 Microbiology and virology",

author = "Per Johansson and Elina J{\"a}{\"a}skel{\"a}inen and Elina S{\"a}de and Johanna Bj{\"o}rkroth",

year = "2023",

doi = "10.1099/ijsem.0.005963",

language = "English",

volume = "73",

journal = "International Journal of Systematic and Evolutionary Microbiology",

issn = "1466-5026",

publisher = "American Society for Microbiology",

number = "7",

}

Vagococcus proximus sp. nov. and Vagococcus intermedius sp. nov., originating from modified atmosphere packaged broiler meat. / Johansson, Per ; Jääskeläinen, Elina ; Säde, Elina et al.
In: International Journal of Systematic and Evolutionary Microbiology, Vol. 73, No. 7, 005963, 2023.

Research output: Contribution to journal › Article › Scientific › peer-review

TY - JOUR

T1 - Vagococcus proximus sp. nov. and Vagococcus intermedius sp. nov., originating from modified atmosphere packaged broiler meat

AU - Johansson, Per

AU - Jääskeläinen, Elina

AU - Säde, Elina

AU - Björkroth, Johanna

PY - 2023

Y1 - 2023

N2 - During our studies on spoilage microbiomes of modified atmosphere packaged broiler meat, we isolated three strains (PNs007T, STAA11T and STAA25) of unknown identity. In this present polyphasic taxonomy study, including genome- based analyses, we discovered that these isolates represent two novel species belonging to the genus Vagococcus. In all phylogenetic analyses, PNs007T was positioned very close to Vagococcus fessus but both the average nucleotide identity (ANI; 89.5 %) and digital DNA- DNA hybridization (dDDH; 38.3 %) values distinguished it as a novel vagococcal species. STAA11T and STAA25 were genetically highly similar (16S rRNA, ANI and dDDH 100 %). The phylogenetic position of STAA11T was adjacent to but out of the cluster containing V. fessus, Vagococcus coleopterorum and PNs007T. According to the ANI (76.2-76.4 %) and dDDH (

AB - During our studies on spoilage microbiomes of modified atmosphere packaged broiler meat, we isolated three strains (PNs007T, STAA11T and STAA25) of unknown identity. In this present polyphasic taxonomy study, including genome- based analyses, we discovered that these isolates represent two novel species belonging to the genus Vagococcus. In all phylogenetic analyses, PNs007T was positioned very close to Vagococcus fessus but both the average nucleotide identity (ANI; 89.5 %) and digital DNA- DNA hybridization (dDDH; 38.3 %) values distinguished it as a novel vagococcal species. STAA11T and STAA25 were genetically highly similar (16S rRNA, ANI and dDDH 100 %). The phylogenetic position of STAA11T was adjacent to but out of the cluster containing V. fessus, Vagococcus coleopterorum and PNs007T. According to the ANI (76.2-76.4 %) and dDDH (

KW - Map

KW - Vagococcus intermedius sp

KW - Vagococcus proximus sp

KW - Modified atmosphere packaged broiler meat

KW - Nov

KW - 11832 Microbiology and virology

U2 - 10.1099/ijsem.0.005963

DO - 10.1099/ijsem.0.005963

M3 - Article

C2 - 37462470

SN - 1466-5026

VL - 73

JO - International Journal of Systematic and Evolutionary Microbiology

JF - International Journal of Systematic and Evolutionary Microbiology

IS - 7

M1 - 005963

ER -