Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Yvan Le Bras; Olivier Collin; Cyril Monjeaud; Vincent Lacroix; Eric Rivals; Claire Lemaitre; Vincent Miele; Gustavo Sacomoto; Camille Marchet; Bastien Cazaux; Amal Zine El Aabidine; Leena Salmela; Susete Alves-Carvalho; Alexan Andrieux; Raluca Uricaru; Pierre Peterlongo

doi:10.1186/s13742-015-0105-2

Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Eric Rivals, Claire Lemaitre, Vincent Miele, Gustavo Sacomoto, Camille Marchet, Bastien Cazaux, Amal Zine El Aabidine, Leena Salmela, Susete Alves-Carvalho, Alexan Andrieux, Raluca Uricaru, Pierre Peterlongo

Tutkimustuotos: Artikkelijulkaisu › Artikkeli › Tieteellinen › vertaisarvioitu

Alkuperäiskieli	englanti
Artikkeli	9
Lehti	GigaScience
Vuosikerta	5
Sivumäärä	14
ISSN	2047-217X
DOI - pysyväislinkit	https://doi.org/10.1186/s13742-015-0105-2
Tila	Julkaistu - 11 helmik. 2016
OKM-julkaisutyyppi	A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä, vertaisarvioitu

Tieteenalat

113 Tietojenkäsittely- ja informaatiotieteet

Pääsy asiakirjaan

10.1186/s13742-015-0105-2Lisenssi: CC BY

13742_2015_Article_105Lisenssi: CC BY

Siteeraa tätä

Le Bras, Y., Collin, O., Monjeaud, C., Lacroix, V., Rivals, E., Lemaitre, C., Miele, V., Sacomoto, G., Marchet, C., Cazaux, B., El Aabidine, A. Z., Salmela, L., Alves-Carvalho, S., Andrieux, A., Uricaru, R., & Peterlongo, P. (2016). Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads. GigaScience, 5, Artikkeli 9. https://doi.org/10.1186/s13742-015-0105-2

@article{88557d0cec1045a0a29f73326861417c,

title = "Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads",

keywords = "NGS, Metagenomics, RNA-seq, Variant calling, Whole-genome assembly-less treatment, De Bruijn graph, Bloom filter, long read correction, GENOME, 113 Computer and information sciences",

author = "{Le Bras}, Yvan and Olivier Collin and Cyril Monjeaud and Vincent Lacroix and Eric Rivals and Claire Lemaitre and Vincent Miele and Gustavo Sacomoto and Camille Marchet and Bastien Cazaux and {El Aabidine}, {Amal Zine} and Leena Salmela and Susete Alves-Carvalho and Alexan Andrieux and Raluca Uricaru and Pierre Peterlongo",

year = "2016",

month = feb,

day = "11",

doi = "10.1186/s13742-015-0105-2",

language = "English",

volume = "5",

journal = "GigaScience",

issn = "2047-217X",

publisher = "Oxford University Press",

}

Le Bras, Y, Collin, O, Monjeaud, C, Lacroix, V, Rivals, E, Lemaitre, C, Miele, V, Sacomoto, G, Marchet, C, Cazaux, B, El Aabidine, AZ, Salmela, L, Alves-Carvalho, S, Andrieux, A, Uricaru, R & Peterlongo, P 2016, 'Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads', GigaScience, Vuosikerta 5, 9. https://doi.org/10.1186/s13742-015-0105-2

TY - JOUR

T1 - Colib'read on galaxy

T2 - a tools suite dedicated to biological information extraction from raw NGS reads

AU - Le Bras, Yvan

AU - Collin, Olivier

AU - Monjeaud, Cyril

AU - Lacroix, Vincent

AU - Rivals, Eric

AU - Lemaitre, Claire

AU - Miele, Vincent

AU - Sacomoto, Gustavo

AU - Marchet, Camille

AU - Cazaux, Bastien

AU - El Aabidine, Amal Zine

AU - Salmela, Leena

AU - Alves-Carvalho, Susete

AU - Andrieux, Alexan

AU - Uricaru, Raluca

AU - Peterlongo, Pierre

PY - 2016/2/11

Y1 - 2016/2/11

KW - NGS

KW - Metagenomics

KW - RNA-seq

KW - Variant calling

KW - Whole-genome assembly-less treatment

KW - De Bruijn graph

KW - Bloom filter

KW - long read correction

KW - GENOME

KW - 113 Computer and information sciences

U2 - 10.1186/s13742-015-0105-2

DO - 10.1186/s13742-015-0105-2

M3 - Article

SN - 2047-217X

VL - 5

JO - GigaScience

JF - GigaScience

M1 - 9

ER -