Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus

Sigisfredo Garnica; Max Emil Schön; Kessy Abarenkov; Kai Riess; Kare Liimatainen; Tuula Niskanen; Balint Dima; Karl Soop; Tobias Guldberg Froslev; Thomas Stjernegaard Jeppesen; Ursula Peintner; Regina Kuhnert-Finkernagel; Tor Erik Brandrud; Günter Saar; Bernhard Oertel; Joseph F. Ammirati

doi:10.1093/femsec/fiw045

Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus

Sigisfredo Garnica, Max Emil Schön, Kessy Abarenkov, Kai Riess, Kare Liimatainen, Tuula Niskanen, Balint Dima, Karl Soop, Tobias Guldberg Froslev, Thomas Stjernegaard Jeppesen, Ursula Peintner, Regina Kuhnert-Finkernagel, Tor Erik Brandrud, Günter Saar, Bernhard Oertel, Joseph F. Ammirati

Tutkimustuotos: Artikkelijulkaisu › Artikkeli › Tieteellinen › vertaisarvioitu

Alkuperäiskieli	englanti
Artikkeli	045
Lehti	FEMS Microbiology Ecology
Vuosikerta	92
Numero	4
Sivumäärä	16
ISSN	0168-6496
DOI - pysyväislinkit	https://doi.org/10.1093/femsec/fiw045
Tila	Julkaistu - huhtik. 2016
OKM-julkaisutyyppi	A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä, vertaisarvioitu

Tieteenalat

1183 Kasvibiologia, mikrobiologia, virologia

Pääsy asiakirjaan

10.1093/femsec/fiw045

Siteeraa tätä

Garnica, S., Schön, M. E., Abarenkov, K., Riess, K., Liimatainen, K., Niskanen, T., Dima, B., Soop, K., Froslev, T. G., Jeppesen, T. S., Peintner, U., Kuhnert-Finkernagel, R., Brandrud, T. E., Saar, G., Oertel, B., & Ammirati, J. F. (2016). Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus. FEMS Microbiology Ecology, 92(4), Artikkeli 045. https://doi.org/10.1093/femsec/fiw045

@article{227122c17187407bbe7cf6aab59e81cd,

title = "Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus",

keywords = "barcoding gap, Cortinarius, DNA barcoding, internal transcribed spacer (ITS), molecular operational taxonomic unit (MOTU), species identification, threshold approaches, MULTIPLE SEQUENCE ALIGNMENT, INTERNAL TRANSCRIBED SPACER, DNA BARCODES, SPECIES DELIMITATION, SECTION CALOCHROI, PHYLOGENETIC-RELATIONSHIPS, NUCLEOTIDE-SEQUENCES, NORTHERN EUROPE, HIGH-THROUGHPUT, LAND PLANTS, 1183 Plant biology, microbiology, virology",

author = "Sigisfredo Garnica and Sch{\"o}n, {Max Emil} and Kessy Abarenkov and Kai Riess and Kare Liimatainen and Tuula Niskanen and Balint Dima and Karl Soop and Froslev, {Tobias Guldberg} and Jeppesen, {Thomas Stjernegaard} and Ursula Peintner and Regina Kuhnert-Finkernagel and Brandrud, {Tor Erik} and G{\"u}nter Saar and Bernhard Oertel and Ammirati, {Joseph F.}",

year = "2016",

month = apr,

doi = "10.1093/femsec/fiw045",

language = "English",

volume = "92",

journal = "FEMS Microbiology Ecology",

issn = "0168-6496",

publisher = "Oxford University Press",

number = "4",

}

Garnica, S, Schön, ME, Abarenkov, K, Riess, K, Liimatainen, K, Niskanen, T, Dima, B, Soop, K, Froslev, TG, Jeppesen, TS, Peintner, U, Kuhnert-Finkernagel, R, Brandrud, TE, Saar, G, Oertel, B & Ammirati, JF 2016, 'Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus', FEMS Microbiology Ecology, Vuosikerta 92, Nro 4, 045. https://doi.org/10.1093/femsec/fiw045

Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus. / Garnica, Sigisfredo; Schön, Max Emil; Abarenkov, Kessy et al.
julkaisussa: FEMS Microbiology Ecology, Vuosikerta 92, Nro 4, 045, 04.2016.

Tutkimustuotos: Artikkelijulkaisu › Artikkeli › Tieteellinen › vertaisarvioitu

TY - JOUR

T1 - Determining threshold values for barcoding fungi

T2 - lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus

AU - Garnica, Sigisfredo

AU - Schön, Max Emil

AU - Abarenkov, Kessy

AU - Riess, Kai

AU - Liimatainen, Kare

AU - Niskanen, Tuula

AU - Dima, Balint

AU - Soop, Karl

AU - Froslev, Tobias Guldberg

AU - Jeppesen, Thomas Stjernegaard

AU - Peintner, Ursula

AU - Kuhnert-Finkernagel, Regina

AU - Brandrud, Tor Erik

AU - Saar, Günter

AU - Oertel, Bernhard

AU - Ammirati, Joseph F.

PY - 2016/4

Y1 - 2016/4

KW - barcoding gap

KW - Cortinarius

KW - DNA barcoding

KW - internal transcribed spacer (ITS)

KW - molecular operational taxonomic unit (MOTU)

KW - species identification

KW - threshold approaches

KW - MULTIPLE SEQUENCE ALIGNMENT

KW - INTERNAL TRANSCRIBED SPACER

KW - DNA BARCODES

KW - SPECIES DELIMITATION

KW - SECTION CALOCHROI

KW - PHYLOGENETIC-RELATIONSHIPS

KW - NUCLEOTIDE-SEQUENCES

KW - NORTHERN EUROPE

KW - HIGH-THROUGHPUT

KW - LAND PLANTS

KW - 1183 Plant biology, microbiology, virology

U2 - 10.1093/femsec/fiw045

DO - 10.1093/femsec/fiw045

M3 - Article

SN - 0168-6496

VL - 92

JO - FEMS Microbiology Ecology

JF - FEMS Microbiology Ecology

IS - 4

M1 - 045

ER -