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LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is assumed to be small, and the PacBio read set, which is then corrected using the reference set. Typically, the reference set contains Illumina reads.
Alkuperäiskielienglanti
TilaJulkaistu - 2014
OKM-julkaisutyyppiI2 Tieto- ja viestintätekniset sovellukset

Tieteenalat

  • 113 Tietojenkäsittely- ja informaatiotieteet

Lainaa tätä

Salmela, L. M. (Kirjoittaja), & Rivals, E. (Kirjoittaja). (2014). LoRDEC. Ohjelmisto, Haettu kohteesta http://atgc.lirmm.fr/lordec/
Salmela, Leena Maija (Kirjoittaja) ; Rivals, Eric (Kirjoittaja). / LoRDEC. [Ohjelmisto].
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title = "LoRDEC",
abstract = "LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is assumed to be small, and the PacBio read set, which is then corrected using the reference set. Typically, the reference set contains Illumina reads.",
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author = "Salmela, {Leena Maija} and Eric Rivals",
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Salmela, LM & Rivals, E, LoRDEC, 2014, Ohjelmisto.
LoRDEC. Salmela, Leena Maija (Kirjoittaja); Rivals, Eric (Kirjoittaja). 2014.

Tutkimustuotos: Ei-tekstimuotoinenOhjelmistoTieteellinen

TY - ADVS

T1 - LoRDEC

AU - Salmela, Leena Maija

AU - Rivals, Eric

PY - 2014

Y1 - 2014

N2 - LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is assumed to be small, and the PacBio read set, which is then corrected using the reference set. Typically, the reference set contains Illumina reads.

AB - LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is assumed to be small, and the PacBio read set, which is then corrected using the reference set. Typically, the reference set contains Illumina reads.

KW - 113 Computer and information sciences

KW - Bioinformatics

M3 - Software

ER -

Salmela LM (Kirjoittaja), Rivals E (Kirjoittaja). LoRDEC 2014.