Peak alignment using restricted edit distances

Tutkimustuotos: ArtikkelijulkaisuArtikkeliTieteellinenvertaisarvioitu

Kuvaus

A peak is a pair of real values (x, y), where x is the time when peak of height y is registered. In the peak alignment problem, we are given two sequences of peaks, and our task is to align the sequences allowing some basic edit operations on the peaks. We study an instance of the peak alignment problem that arises in the analysis of Mass Spectrometry data in Systems Biology. There the measurement technique guarantees that two peaks (x, y), (x', y') can only be considered the same if x is close enough toe, and y is close enough to y'. We review some methods to do alignment under such restrictions on matches. (C) 2007 Elsevier B.V. All rights reserved.
Alkuperäiskielienglanti
LehtiBiomolecular engineering
Vuosikerta24
Numero3
Sivut337-342
Sivumäärä6
ISSN1389-0344
DOI - pysyväislinkit
TilaJulkaistu - 2007
OKM-julkaisutyyppiA1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä, vertaisarvioitu

Tieteenalat

  • 118 Biotieteet

Lainaa tätä

Mäkinen, Veli. / Peak alignment using restricted edit distances. Julkaisussa: Biomolecular engineering. 2007 ; Vuosikerta 24, Nro 3. Sivut 337-342.
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Peak alignment using restricted edit distances. / Mäkinen, Veli.

julkaisussa: Biomolecular engineering, Vuosikerta 24, Nro 3, 2007, s. 337-342.

Tutkimustuotos: ArtikkelijulkaisuArtikkeliTieteellinenvertaisarvioitu

TY - JOUR

T1 - Peak alignment using restricted edit distances

AU - Mäkinen, Veli

PY - 2007

Y1 - 2007

N2 - A peak is a pair of real values (x, y), where x is the time when peak of height y is registered. In the peak alignment problem, we are given two sequences of peaks, and our task is to align the sequences allowing some basic edit operations on the peaks. We study an instance of the peak alignment problem that arises in the analysis of Mass Spectrometry data in Systems Biology. There the measurement technique guarantees that two peaks (x, y), (x', y') can only be considered the same if x is close enough toe, and y is close enough to y'. We review some methods to do alignment under such restrictions on matches. (C) 2007 Elsevier B.V. All rights reserved.

AB - A peak is a pair of real values (x, y), where x is the time when peak of height y is registered. In the peak alignment problem, we are given two sequences of peaks, and our task is to align the sequences allowing some basic edit operations on the peaks. We study an instance of the peak alignment problem that arises in the analysis of Mass Spectrometry data in Systems Biology. There the measurement technique guarantees that two peaks (x, y), (x', y') can only be considered the same if x is close enough toe, and y is close enough to y'. We review some methods to do alignment under such restrictions on matches. (C) 2007 Elsevier B.V. All rights reserved.

KW - 118 Biological sciences

U2 - 10.1016/j.bioeng.2007.02.007

DO - 10.1016/j.bioeng.2007.02.007

M3 - Article

VL - 24

SP - 337

EP - 342

JO - Biomolecular engineering

JF - Biomolecular engineering

SN - 1389-0344

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