Phylogenomics, divergence times and notes of orders in Basidiomycota

Mao-Qiang He, Bin Cao, Fei Liu, Teun Boekhout, Teodor T. Denchev, Nathan Schoutteten, Cvetomir M. Denchev, Martin Kemler, Sergio P. Gorjón, Dominik Begerow, Ricardo Valenzuela, Naveed Davoodian, Tuula Niskanen, Alfredo Vizzini, Scott A. Redhead, Virginia Ramírez-Cruz, Viktor Papp, Vasiliy A. Dudka, Arun Kumar Dutta, Ricardo García-SandovalXin-Zhan Liu, Teeratas Kijpornyongpan, Anton Savchenko, Leho Tedersoo, Bart Theelen, Larissa Trierveiler-Pereira, Fang Wu, Juan Carlos Zamora, Xiang-Yu Zeng, Li-Wei Zhou, Shi-Liang Liu, Masoomeh Ghobad-Nejhad, Admir J. Giachini, Guo-Jie Li, Makoto Kakishima, Ibai Olariaga, Danny Haelewaters, Bobby Sulistyo, Junta Sugiyama, Sten Svantesson, Andrey Yurkov, Pablo Alvarado, Vladimír Antonín, André Felipe da Silva, Irina Druzhinina, Tatiana B. Gibertoni, Laura Guzmán-Dávalos, Alfredo Justo, Samantha C. Karunarathna, Mahesh C. A. Galappaththi, Merje Toome-Heller, Tsuyoshi Hosoya, Kare Liimatainen, Rodrigo Márquez, Armin Mešić, Jean-Marc Moncalvo, László G. Nagy, Torda Varga, Takamichi Orihara, Tania Raymundo, Isabel Salcedo, Alexandre G. S. Silva-Filho, Zdenko Tkalčec, Felipe Wartchow, Chang-Lin Zhao, Tolgor Bau, Milay Cabarroi-Hernández, Alonso Cortés-Pérez, Cony Decock, Ruben De Lange, Michael Weiss, Nelson Menolli Jr., R. Henrik Nilsson, Yu-Guang Fan, Annemieke Verbeken, Yusufjon Gafforov, Angelina Meiras-Ottoni, Renato L. Mendes-Alvarenga, Nian-Kai Zeng, Qi Wu, Kevin D. Hyde, Paul M. Kirk, Rui Lin Zhao

Tutkimustuotos: ArtikkelijulkaisuArtikkeliTieteellinenvertaisarvioitu

Abstrakti

Basidiomycota is one of the major phyla in the fungal tree of life. The outline of Basidiomycota provides essential taxonomic information for researchers and workers in mycology. In this study, we present a time-framed phylogenomic tree with 487 species of Basidiomycota from 127 families, 47 orders, 14 classes and four subphyla; we update the outline of Basidiomycota based on the phylogenomic relationships and the taxonomic studies since 2019; and we provide notes for each order and discuss the history, defining characteristics, evolution, justification of orders, problems, significance, and plates. Our phylogenomic analysis suggests that the subphyla diverged in a time range of 443–490 Myr (million years), classes in a time range of 312–412 Myr, and orders in a time range of 102–361 Myr. Families diverged in a time range of 50–289 Myr, 76–224 Myr, and 62–156 Myr in Agaricomycotina, Pucciniomycotina, and Ustilaginomycotina, respectively. Based on the phylogenomic relationships and divergence times, we propose a new suborder Mycenineae in Agaricales to accommodate Mycenaceae. In the current outline of Basidiomycota, there are four subphyla, 20 classes, 77 orders, 297 families, and 2134 genera accepted. When building a robust taxonomy of Basidiomycota in the genomic era, the generation of molecular phylogenetic data has become relatively easier. Finding phenotypical characters, especially those that can be applied for identification and classification, however, has become increasingly challenging.

Alkuperäiskielienglanti
LehtiFungal Diversity
Vuosikerta126
Numero1
Sivut127-406
Sivumäärä280
ISSN1560-2745
DOI - pysyväislinkit
TilaJulkaistu - toukok. 2024
OKM-julkaisutyyppiA1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä, vertaisarvioitu

Lisätietoja

Publisher Copyright:
© The Author(s) under exclusive licence to Mushroom Research Foundation 2024.

Tieteenalat

  • 1181 Ekologia, evoluutiobiologia

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