• Finland

  • Finland

Publikationer 1981 2020

2019

A comparison between the homocyclic aromatic metabolic pathways from plant-derived compounds by bacteria and fungi

Lubbers, R., Dilokpimol, A., Visser, J., Mäkelä, M., Hilden, K. & de Vries, R., 2019, I : Biotechnology Advances.

Forskningsoutput: TidskriftsbidragÖversiktsartikelVetenskapligPeer review

Alternative Biosynthetic Starter Units Enhance the Structural Diversity of Cyanobacterial Lipopeptides

Mares, J., Hajek, J., Urajova, P., Kust, A., Jokela, J., Saurav, K., Galica, T., Capkova, K., Mattila, A., Haapaniemi, E., Permi, P., Mysterud, I., Skulberg, O. M., Karlsen, J., Fewer, D. P., Sivonen, K., Tonnesen, H. H. & Hrouzek, P., feb 2019, I : Applied and Environmental Microbiology. 85, 4, 17 s., UNSP e02675-18.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

An atypical Bacillus anthracis infection in a bull-A potential occupational health hazard

Friman, M., Kakko, L., Constantin, C., Simojoki, H., Andersson, M. A., Nagy, S., Salonen, H. & Andersson, M., sep 2019, I : Reproduction in Domestic Animals. 54, 9, s. 1279-1283 5 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Antibacterial polymer fibres by rosin compounding and melt-spinning

Kanerva, M., Puolakka, A., Takala, T. M., Elert, A. M., Mylläri, V., Jönkkäri, I., Sarlin, E., Seitsonen, J., Ruokolainen, J., Saris, P. & Vuorinen, J., sep 2019, I : Materials Today Communications. 20, 9 s., 100527.

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Antibiotic Resistance Genes in the Human-Impacted Environment: A One Health Perspective

Tiedje, J. M., Wang, F., Manaia, C. M., Virta, M., Sheng, H., Ma, L., Zhang, T. & Topp, E., jun 2019, I : Pedosphere. 29, 3, s. 273-282 10 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence

Parnanen, K. M. M., Narciso-da-Rocha, C., Kneis, D., Berendonk, T. U., Cacace, D., Thi Thuy Do, Elpers, C., Fatta-Kassinos, D., Henriques, I., Jaeger, T., Karkman, A., Luis Martinez, J., Michael, S. G., Michael-Kordatou, I., O'Sullivan, K., Rodriguez-Mozaz, S., Schwartz, T., Sheng, H., Sorum, H., Stedtfeld, R. D. & 6 andraTiedje, J. M., Varela Della Giustina, S., Walsh, F., Vaz-Moreira, I., Virta, M. & Manaia, C. M., mar 2019, I : Science Advances. 5, 3, 10 s., 9124.

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Antimicrobial and antileukemic metabolites from Cyanobacteria

Christodoulou, M., 8 maj 2019

Forskningsoutput: AvhandlingMagisteruppsatsAvhandlingar

A Pharmaceutical Model for the Molecular Evolution of Microbial Natural Products

Fewer, D. P. & Metsä-Ketelä, M., 6 nov 2019, I : The FEBS Journal.

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Bayesian metabolic flux analysis reveals intracellular flux couplings

Heinonen, M., Osmala, M., Mannerström, H., Wallenius, J., Kaski, S., Rousu, J. & Lähdesmäki, H., 15 jul 2019, I : Bioinformatics. 35, 14, s. I548-I557 10 s.

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Biosynthesis of the bis-prenylated alkaloids muscoride A and B

Mattila, A., Andsten, R-M., Jumppanen, M., Assante, M., Jokela, J., Wahlsten, M., Mikula, K. M., Sigindere, C., Kwak, D. H., Gugger, M., Koskela, H., Sivonen, K., Liu, X., Yli-Kauhaluoma, J., Iwaï, H. & Fewer, D., 1 nov 2019, (!!Accepted/In press) I : ACS Chemical Biology.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Cellulolytic activity of brown-rot Antrodia sinuosa at the initial stage of cellulose degradation

Sugano, J., Linnakoski, R., Huhtinen, S., Pappinen, A., Niemela, P. & Asiegbu, F. O., jul 2019, I : Holzforschung : international journal of the biology, chemistry, physics and technology of wood. 73, 7, s. 673-680 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Characterization of the interaction of the antifungal and cytotoxic cyclic glycolipopeptide hassallidin with sterol-containing lipid membranes.

Humisto, A., Jokela, J., Teigen, K., Wahlsten, M., Permi, P., Sivonen, K. & Herfindal, L., 1 aug 2019, I : Biochimica et Biophysica Acta. Biomembranes. 1861, s. 1510-1521 11 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger

Lubbers, R. J. M., Dilokpimol, A., Navarro, J., Peng, M., Wang, M., Lipzen, A., Ng, V., Grigoriev, I. V., Visser, J., Hildén, K. S. & de Vries, R. P., 2019, I : Frontiers in Bioengineering and Biotechnology. 7

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Dehydroabietylamine-Based Cellulose Nanofibril Films: A New Class of Sustainable Biomaterials for Highly Efficient, Broad-Spectrum Antimicrobial Effects

Hassan, G. A. M. S., Forsman, N., Wan, X., Keurulainen, L., Bimbo, L. M., Johansson, L-S., Sipari, N., Yli-Kauhaluoma, J. T., Zimmermann, R., Stehl, S., Werner, C., Saris, P. E. J., Österberg, M. & Moreira, V. M., 4 mar 2019, I : ACS Sustainable Chemistry & Engineering. 7, 5, s. 5002-5009 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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Developments and opportunities in fungal strain engineering for the production of novel enzymes and enzyme cocktails for plant biomass degradation

Kun, R., Gomes, A. C. S., Hilden, S. K., Salazar Cerezo, S., Mäkelä, M. R. & de Vries, R., 1 nov 2019, I : Biotechnology Advances. 37, 6-7, 16 s., 107361.

Forskningsoutput: TidskriftsbidragÖversiktsartikelVetenskapligPeer review

Draft genome sequences of three monokaryotic isolates of the white-rot basidiomycete fungus Dichomitus squalens

Casado López, S., Peng, M., Daly, P., Andreopoulos, B., Pangilinan, J., Lipzen, A., Riley, R., Ahrendt, S., Ng, V., Barry, K., Daum, C., Grigoriev, I. V., Hilden, S. K., Mäkelä, M. R. & de Vries, R. P., 2019, (!!Accepted/In press) I : Microbiology Resource Announcements.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Drivers of phytoplankton production and community structure in nutrient-poor estuaries receiving terrestrial organic inflow

Paczkowska, J., Rowe, O. F., Figueroa, D. & Andersson, A., 21 aug 2019, I : Marine Environmental Research. 10 s., 104778.

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Dynamics of Protein Accumulation from the 3 ' End of Viral RNA Are Different from Those in the Rest of the Genome in Potato Virus A Infection

Saha, S., Hafren, A. & Makinen, K., okt 2019, I : Journal of Virology. 93, 19, 18 s., ARTN e00721-19.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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Effects of allochthonous DOM input on microbial composition and nitrogen cycling genes at two contrasting estuarine sites

Happel, E. M., Trine, M., Teikari, J., Huchaiah, V., Alneberg, J., Andersson, A. F., Sivonen, K., Middelboe, M., Kisand, V. & Riemann, L., 2019, (!!Accepted/In press) I : FEMS Microbiology Ecology.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments

Karkman, A., Parnanen, K. & Larsson, D. G. J., 8 jan 2019, I : Nature Communications. 10, 8 s., 80.

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Field-compatible protocol for detecting tetracyclines with bioluminescent bioreporters without pipetting steps

Muurinen, J., Pasupulate, A., Lappalainen, J. & Virta, M., mar 2019, I : Luminescence. 34, 2, s. 249-254 6 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Frequency of virus-resistant hosts determines experimental community dynamics.

Coloma, S. E., Gaedge, U., Sivonen, A. K. & Hiltunen, T. J., jan 2019, I : Ecology. 100, 1, s. 1-9 9 s., e02554.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Fungal enzymes for bioremediation

Tuomela, M. & Hatakka, A., 14 aug 2019, Comprehensive Biotechnology, Third Edition. Moo-Young, M. (red.). 3rd Edition red. Elsevier, Vol. 6. s. 224-239 16 s. 17

Forskningsoutput: Kapitel i bok/rapport/konferenshandlingKapitelVetenskapligPeer review

Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

Mäkinen, M., Kuuskeri, J., Laine, P., Smolander, O-P., Kovalchuk, A., Zeng, Z., Asiegbu, F., Paulin, L., Auvinen, P. & Lundell, T., 28 maj 2019, I : BMC Genomics. 20, 22 s., 430.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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Glucose-mediated repression of plant biomass utilization in the white-rot fungus Dichomitus squalens

Daly, P., Peng, M., Di Falco, M., Lipzen, A., Wang, M., Ng, V., Grigoriev, I. V., Tsang, A., Mäkelä, M. & de Vries, R. P., 2019, (!!Accepted/In press) I : Applied and Environmental Microbiology.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Identification and structural analysis of cereal arabinoxylan-derived oligosaccharides by negative ionization HILIC-MS/MS

Juvonen, M. K., Kotiranta, M., Jokela, J. K., Tuomainen, P. & Tenkanen, T. M., 1 mar 2019, I : Food Chemistry. 275, s. 176-185 10 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315

Teikari, J., Vicentini Popin, R., Hou, S., Wahlsten, M., Hess, W. R. & Sivonen, K., 20 mar 2019, I : Scientific Reports. 9, 13 s., 4888.

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Interaction between tannins and fungal necromass stabilizes fungal residues in boreal forest soils

Adamczyk, B., Sietio, O-M., Biasi, C. & Heinonsalo, J., jul 2019, I : New Phytologist. 223, 1, s. 16-21 6 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskaplig

Introduction to Special Issue of Molecular Plant Pathology - “Extracellular and intracellular perception of plant viruses”.

Aranda, M., Mäkinen, K. & Verchot, J., 2 jun 2019, (!!Accepted/In press)

Forskningsoutput: Bok/rapportAntologi eller special utgåvaVetenskaplig

L-LEUCINE COATED INHALABLE TEICOPLANIN POWDERS PRODUCED BY AEROSOL FLOW REACTOR METHOD

Ugur, N., Bimbo, L. M., Saris, P., Vartiainen, V., Hirvonen, J., Kauppinen, E. I. & Raula, J., 1 jun 2019, I : Journal of Aerosol Medicine and Pulmonary Drug Delivery. 32, 3, s. A18-A19 2 s.

Forskningsoutput: TidskriftsbidragMötesabstraktForskningPeer review

Midbiotics: conjugative plasmids for genetic engineering of natural gut flora

Ruotsalainen, P., Penttinen, R., Mattila, S. & Jalasvuori, M., 5 apr 2019, I : Gut Microbes. s. 1-11 11 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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New Phylogenetic Grouping of Positive-Sense RNA Viruses Is Concordant with Replication Complex Morphology

Ahola, T., 2019, I : mBio. 10, 4, 2 s., ARTN e01402-19.

Forskningsoutput: TidskriftsbidragBrevVetenskaplig

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Occurrence of sul and tet(M) genes in bacterial community in Japanese marine aquaculture environment throughout the year: Profile comparison with Taiwanese and Finnish aquaculture waters

Suzuki, S., Nakanishi, S., Tamminen, M., Yokokawa, T., Sato-Takabe, Y., Ohta, K., Chou, H-Y., Muziasari, W. I. & Virta, M., 15 jun 2019, I : Science of the Total Environment. 669, s. 649-656 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

On the role of hot water extraction as a pretreatment method in search for soft pulping methods for modern biorefineries

Sipilä, J., Hyväkkö, U., Maltari, R., Kakko, T-A., Kontro, J., Mikkilä, J. A., Kilpeläinen, P., Enqvist, E., Tikka, P., Hilden, K. & Nousiainen, P. A., 31 mar 2019, 257th American Chemical Society (ACS) : Chemistry for New Frontiers. Orlando, Florida, Vol. 257. s. 1 (257th American Chemical Society (ACS) National Meeting & Exposition: Chemistry for New Frontiers; vol. 257).

Forskningsoutput: Kapitel i bok/rapport/konferenshandlingKonferensbidragVetenskapligPeer review

Plant roots increase both decomposition and stable organic matter formation in boreal forest soil

Adamczyk, B., Sietio, O-M., Strakoya, P., Prommer, J., Wild, B., Hagner, M., Pihlatie, M., Fritze, H., Richter, A. & Heinonsalo, J., 4 sep 2019, I : Nature Communications. 10, 9 s., 3982.

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Predator coevolution and prey trait variability determine species coexistence

Scheued, T., Cairns, J., Becks, L. & Hiltunen, T., 1 maj 2019, I : Proceedings of the Royal Society B. Biological Sciences. 286, 1902, 9 s., 20190245.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Prevalence and disease association of human parvovirus B19 in Iran: a Systematic Review

Sadeghi, M., 2019, I : Future Virology.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Progress and Research Needs of Plant Biomass Degradation by Basidiomycete Fungi

Mäkelä, M. R., Hilden, K., Kowalczyk, J. E. & Hatakka, A., 2019, Grand Challenges in Fungal Biotechnology. Nevalainen, H. (red.). Springer International Publishing

Forskningsoutput: Kapitel i bok/rapport/konferenshandlingKapitelVetenskapligPeer review

Recombinant production and characterization of six novel GH27 and GH36 alpha-galactosidases from Penicillium subrubescens and their synergism with a commercial mannanase during the hydrolysis of lignocellulosic biomass

Cononi Linares, N., Dilokpimol, A., Stålbrand, H., Mäkelä, M. & de Vries, R., 2019, (!!Accepted/In press) I : Bioresource Technology. 295

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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Separate domains of G3BP promote efficient clustering of alphavirus replication complexes and recruitment of the translation initiation machinery

Götte, B., Panas, M. D., Hellström, K., Liu, L., Samreen, B., Larsson, O., Ahola, T. & McInerney, G. M., 14 jun 2019, I : PLoS Pathogens. 15, 6, 24 s., 1007842.

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The Biosynthesis of Rare Homo-Amino Acid Containing Variants of Microcystin by a Benthic Cyanobacterium

Shishido, T. K., Jokela, J., Humisto, A., Suurnäkki, S., Wahlsten, M., Oliveria de Alvarenga, D., Sivonen, K. & Fewer, D., 7 maj 2019, I : Marine Drugs. 17, 5, s. 1 16 s., 271.

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