• Finland

  • Finland

Publikationer

2020

A comparative genomics study of 23 Aspergillus species from section Flavi

Kjaerbolling, I., Vesth, T., Frisvad, J. C., Nybo, J. L., Theobald, S., Kildgaard, S., Petersen, T. I., Kuo, A., Sato, A., Lyhne, E. K., Kogle, M. E., Wiebenga, A., Kun, R. S., Lubbers, R. J. M., Makela, M. R., Barry, K., Chovatia, M., Clum, A., Daum, C., Haridas, S. & 17 andra, He, G., LaButti, K., Lipzen, A., Mondo, S., Pangilinan, J., Riley, R., Salamov, A., Simmons, B. A., Magnuson, J. K., Henrissat, B., Mortensen, U. H., Larsen, T. O., de Vries, R. P., Grigoriev, I. V., Machida, M., Baker, S. E. & Andersen, M. R., 27 feb 2020, I : Nature Communications. 11, 1, 12 s., 1106.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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Antibioottiresistenssi haastaa monialaiseen yhteistyöhön

Muurinen, J., Cairns, J., Aalto-Araneda, M., Vänttinen, J. & Kaskela, J., 31 jan 2020, I : Suomen lääkärilehti. 75, 5, s. 231 1 s.

Forskningsoutput: TidskriftsbidragArtikelProfessionell

Contrasting microbiotas between Finnish and Estonian infants: exposure to Acinetobacter may contribute to the allergy gap

Ruokolainen, L., Parkkola, A., Karkman, A., Sinkko, H., Peet, A., Hämäläinen, A-M., von Hertzen, L., Tillmann, V., Koski, K., Virtanen, S. M., Niemelä, O., Haahtela, T. & Knip, M., 28 feb 2020, I : Allergy : European journal of allergy and clinical immunology.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

CRISPR/Cas9 facilitates rapid generation of constitutive forms of transcription factors in Aspergillus niger through specific on-site genomic mutations resulting in increased saccharification of plant biomass

Kun, R. S., Salazar-Cerezo, S., Mäkelä, M., de Vries, R. P. & Garrigues, S., 2020, (!!Accepted/In press) I : Enzyme and microbial technology.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Dereplication of natural products with antimicrobial and anticancer activity from Brazilian cyanobacteria.

Shishido, T. K., Vicentini Popin, R., Jokela, J., Wahlsten, M., Fiore, M. F., Fewer, D., Herfindal, L. & Sivonen, K., jan 2020, I : Toxins. 12, 12, 17 s., 2020, 12, 12.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Enzyme activity profiles produced on wood and straw by four fungi of different decay strategies

Veloz Villavicencio, E. E., Mali, T., Mattila, H. & Lundell, T., 2 jan 2020, I : Microorganisms. 8, 1, 18 s., 73.

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Facile synthesis of vanillin from fractionated Kraft lignin

Zhang, R., Maltari, R., Guo, M., Kontro, J., Eronen, A. & Repo, T., mar 2020, I : Industrial Crops and Products. 145

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Genomic and postgenomic diversity of fungal plant biomass degradation approaches

de Vries, R. & Mäkelä, M., 2020, (!!Accepted/In press) I : Trends in Microbiology.

Forskningsoutput: TidskriftsbidragÖversiktsartikelVetenskapligPeer review

Growth and metabolic characteristics of fastidious meat-derived Lactobacillus algidus strains

Säde, E., Johansson, P., Heinonen, T., Hultman, J. & Björkroth, J., 16 jan 2020, I : International Journal of Food Microbiology. 313, 8 s., 108379.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Hiiliopas: Katsaus maaperän hiileen ja hiiliviljelyn perusteisiin

Heinonsalo, J. (red.), Heimsch, L., Helenius, J., Huusko, M. K., Höijer, L., Joona, J. M., Kanerva, S., Karhu, K., Kekkonen, H. R., Koppelmäki, K., Kulmala, L., Lötjönen, S., Mattila, T. J., Ollikainen, M., Peltokangas, K., Regina, K., Soinne, H., Wikström, U. & Viskari, T., jan 2020, 1 red. Kaarina: Carbon Action & Baltic Sea Action Group. 60 s.

Forskningsoutput: Bok/rapportBokProfessionell

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Hypoxia is regulating enzymatic wood decomposition and intracellular carbohydrate metabolism in filamentous white rot fungus

Mattila, H., Mäkinen, M. & Lundell, T., 24 feb 2020, I : Biotechnology for Biofuels. 13, 17 s., 26.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator

Chroumpi, T., Aguilar-Pontes, M. V., Peng, M., Wang, M., Lipzen, A., Ng, V., Grigoriev, I. V., Mäkelä, M. & de Vries, R. P., 2020, (!!Accepted/In press) I : Microbiological Research.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Insights into the Functions of eIF4E-Binding Motif of VPg in Potato Virus A Infection

Saha, S. & Mäkinen, K., 11 feb 2020, I : Viruses. 22 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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Long-term application of Swedish sewage sludge on farmland does not cause clear changes in the soil bacterial resistome

Rutgersson, C., Ebmeyer, S., Lassen, S. B., Karkman, A., Fick, J., Kristiansson, E., Brandt, K. K., Flach, C-F. & Larsson, D. G. J., 6 feb 2020, I : Environment International. 137

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Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens

Daly, P., Peng, M., Casado López, S., Lipzen, A., Ng, V., Singan, V., Wang, M., Grigoriev, I., de Vries, R. & Mäkelä, M., 20 jan 2020, I : Journal of Biotechnology. 308, s. 35-39 5 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

On the Effect of Hot-Water Pretreatment in Sulfur-Free Pulping of Aspen and Wheat Straw

Hyväkkö, U., Maltari, R., Kakko, T., Kontro, J., Mikkilä, J., Kilpeläinen, P., Enqvist, E., Tikka, P., Hilden, K., Nousiainen, P. & Sipilä, J., 14 jan 2020, I : ACS Omega. 5, 1, s. 265-273 9 s.

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Phenotypic comparison and DNA sequencing analysis of a wild-type and a pediocin-resistant mutant of Listeria ivanovii

Liu, S., Liu, Y., Takala, T. M., Zhang, P. & Wang, S., 28 feb 2020, I : Research in Microbiology.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Progress and Research Needs of Plant Biomass Degradation by Basidiomycete Fungi

Mäkelä, M. R., Hilden, K., Kowalczyk, J. E. & Hatakka, A., 2020, Grand Challenges in Fungal Biotechnology. Nevalainen, H. (red.). Springer International Publishing , s. 405-438 ( Grand Challenges in Biology and Biotechnology).

Forskningsoutput: Kapitel i bok/rapport/konferenshandlingKapitelVetenskapligPeer review

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Regioselective Prenylation of Peptide Termini during the Biosynthesis of the Natural Product Muscoride

Mattila, A., Andsten, R-M., Jumppanen, M., Assante, M., Jokela, J., Wahlsten, M., Mikula, K. M., Gugger, M., Koskela, H., Sivonen, K., Yli-Kauhaluoma, J., Iwai, H. & Fewer, D. P., jan 2020, I : Marine Drugs. 18, 1, 1 s., 40.

Forskningsoutput: TidskriftsbidragMötesabstraktForskningPeer review

Reinstated p53 response and high anti-T-cell leukemia activity by the novel alkylating deacetylase inhibitor tinostamustine

Puetzer, S., Varghese, L., von Jan, J., Braun, T., Giri, A. K., Mayer, P., Riet, N., Timonen, S., Oberbeck, S., Kuusanmäki, H., Mustjoki, S., Stern, M. -H., Aittokallio, T., Newrzela, S., Schrader, A. & Herling, M., 25 feb 2020, I : Leukemia. 6 s.

Forskningsoutput: TidskriftsbidragBrevVetenskaplig

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2019

A comparison between the homocyclic aromatic metabolic pathways from plant-derived compounds by bacteria and fungi

Lubbers, R. J. M., Dilokpimol, A., Visser, J., Makela, M. R., Hilden, K. S. & de Vries, R. P., 15 nov 2019, I : Biotechnology Advances. 37, 7, 27 s., 107396.

Forskningsoutput: TidskriftsbidragÖversiktsartikelVetenskapligPeer review

A high-throughput approach to the culture-based estimation of plasmid transfer rates

Kneis, D., Hiltunen, T. & Hess, S., jan 2019, I : Plasmid. 101, s. 28-34 7 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Alternative Biosynthetic Starter Units Enhance the Structural Diversity of Cyanobacterial Lipopeptides

Mares, J., Hajek, J., Urajova, P., Kust, A., Jokela, J., Saurav, K., Galica, T., Capkova, K., Mattila, A., Haapaniemi, E., Permi, P., Mysterud, I., Skulberg, O. M., Karlsen, J., Fewer, D. P., Sivonen, K., Tonnesen, H. H. & Hrouzek, P., feb 2019, I : Applied and Environmental Microbiology. 85, 4, 17 s., UNSP e02675-18.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

An atypical Bacillus anthracis infection in a bull-A potential occupational health hazard

Friman, M., Kakko, L., Constantin, C., Simojoki, H., Andersson, M. A., Nagy, S., Salonen, H. & Andersson, M., sep 2019, I : Reproduction in Domestic Animals. 54, 9, s. 1279-1283 5 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Antibacterial polymer fibres by rosin compounding and melt-spinning

Kanerva, M., Puolakka, A., Takala, T. M., Elert, A. M., Mylläri, V., Jönkkäri, I., Sarlin, E., Seitsonen, J., Ruokolainen, J., Saris, P. & Vuorinen, J., sep 2019, I : Materials Today Communications. 20, 9 s., 100527.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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Antibiotic Resistance Genes in the Human-Impacted Environment: A One Health Perspective

Tiedje, J. M., Wang, F., Manaia, C. M., Virta, M., Sheng, H., Ma, L., Zhang, T. & Topp, E., jun 2019, I : Pedosphere. 29, 3, s. 273-282 10 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence

Parnanen, K. M. M., Narciso-da-Rocha, C., Kneis, D., Berendonk, T. U., Cacace, D., Do, T. T., Elpers, C., Fatta-Kassinos, D., Henriques, I., Jaeger, T., Karkman, A., Luis Martinez, J., Michael, S. G., Michael-Kordatou, I., O'Sullivan, K., Rodriguez-Mozaz, S., Schwartz, T., Sheng, H., Sorum, H., Stedtfeld, R. D. & 6 andra, Tiedje, J. M., Varela Della Giustina, S., Walsh, F., Vaz-Moreira, I., Virta, M. & Manaia, C. M., mar 2019, I : Science Advances. 5, 3, 10 s., 9124.

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Antimicrobial and antileukemic metabolites from Cyanobacteria

Christodoulou, M., 8 maj 2019

Forskningsoutput: AvhandlingMagisteruppsats

Antitumor astins originate from the fungal endophyte Cyanodermella asteris living within the medicinal plant Aster tataricus

Schafhauser, T., Jahn, L., Kirchner, N., Kulik, A., Flor, L., Lange, A., Caradec, T., Fewer, D., Sivonen, K., van Berkel, W. J. H., Jacques, P., Weber, T., Gross, H., van Pee, K-H., Wohlleben, W. & Ludwig-Mueller, J., 26 dec 2019, I : Proceedings of the National Academy of Sciences of the United States of America. 116, 52, s. 26909-26917 10 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Ants reign over a distinct microbiome in forest soil

Lindström, S., Timonen, S., Sundström, L. & Johansson, H., dec 2019, I : Soil Biology & Biochemistry. 139, 11 s., 107529.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

A Pharmaceutical Model for the Molecular Evolution of Microbial Natural Products

Fewer, D. P. & Metsä-Ketelä, M., 6 nov 2019, I : The FEBS Journal. 21 s.

Forskningsoutput: TidskriftsbidragÖversiktsartikelVetenskapligPeer review

A Report on Finding a New Peptide Aldehyde from Cyanobacterium Nostoc sp. Bahar M by LC-MS and Marfey's Analysis

Nowruzi, B., Wahlsten, M. & Jokela, J., 2019, I : Iranian journal of biotechnology. 17, 2, s. 71-78 8 s., 1853.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

A Toxicity Screening Approach to Identify Bacteriophage-Encoded Anti-Microbial Proteins

Mohanraj, U., Wan, X., Spruit, C., Skurnik, M. & Pajunen, M., 14 nov 2019, I : Viruses. 11, 1057

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Bayesian metabolic flux analysis reveals intracellular flux couplings

Heinonen, M., Osmala, M., Mannerström, H., Wallenius, J., Kaski, S., Rousu, J. & Lähdesmäki, H., 15 jul 2019, I : Bioinformatics. 35, 14, s. I548-I557 10 s.

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Biosynthesis of the bis-prenylated alkaloids muscoride A and B

Mattila, A., Andsten, R-M., Jumppanen, M., Assante, M., Jokela, J., Wahlsten, M., Mikula, K. M., Sigindere, C., Kwak, D. H., Gugger, M., Koskela, H., Sivonen, K., Liu, X., Yli-Kauhaluoma, J., Iwaï, H. & Fewer, D., 20 dec 2019, I : ACS Chemical Biology. 14, 12, s. 2683-2690 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Cellulolytic activity of brown-rot Antrodia sinuosa at the initial stage of cellulose degradation

Sugano, J., Linnakoski, R., Huhtinen, S., Pappinen, A., Niemela, P. & Asiegbu, F. O., jul 2019, I : Holzforschung : international journal of the biology, chemistry, physics and technology of wood. 73, 7, s. 673-680 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Characterization of the interaction of the antifungal and cytotoxic cyclic glycolipopeptide hassallidin with sterol-containing lipid membranes.

Humisto, A., Jokela, J., Teigen, K., Wahlsten, M., Permi, P., Sivonen, K. & Herfindal, L., 1 aug 2019, I : Biochimica et Biophysica Acta. Biomembranes. 1861, 8, s. 1510-1521 12 s.

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Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger

Lubbers, R. J. M., Dilokpimol, A., Navarro, J., Peng, M., Wang, M., Lipzen, A., Ng, V., Grigoriev, I. V., Visser, J., Hildén, K. S. & de Vries, R. P., 27 sep 2019, I : Frontiers in Bioengineering and Biotechnology. 7, 12 s., 249.

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Co-evolution as an important component explaining microbial predator-prey interaction

Kaitala, V., Hiltunen, T., Becks, L. & Scheuerl, T., 26 nov 2019, I : Journal of Theoretical Biology. 486, 110095.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation

Daly, P., Peng, M., Mitchell, H. D., Kim, Y-M., Ansong, C., Brewer, H., de Gijsel, P., Lipton, M. S., Markillie, L. M., Nicora, C. D., Orr, G., Wiebenga, A., Hilden, K. S., Kabel, M. A., Baker, S. E., Makela, M. R. & de Vries, R. P., 25 dec 2019, I : Environmental Microbiology. 13 s.

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Dehydroabietylamine-Based Cellulose Nanofibril Films: A New Class of Sustainable Biomaterials for Highly Efficient, Broad-Spectrum Antimicrobial Effects

Hassan, G. A. M. S., Forsman, N., Wan, X., Keurulainen, L., Bimbo, L. M., Johansson, L-S., Sipari, N., Yli-Kauhaluoma, J. T., Zimmermann, R., Stehl, S., Werner, C., Saris, P. E. J., Österberg, M. & Moreira, V. M., 4 mar 2019, I : ACS Sustainable Chemistry & Engineering. 7, 5, s. 5002-5009 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

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Developments and opportunities in fungal strain engineering for the production of novel enzymes and enzyme cocktails for plant biomass degradation

Kun, R., Gomes, A. C. S., Hilden, S. K., Salazar Cerezo, S., Mäkelä, M. R. & de Vries, R., 1 nov 2019, I : Biotechnology Advances. 37, 6, 16 s., 107361.

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Discovery of Novel p-Hydroxybenzoate-m-hydroxylase, Protocatechuate 3,4 Ring-Cleavage Dioxygenase, and Hydroxyquinol 1,2 Ring-Cleavage Dioxygenase from the Filamentous Fungus Aspergillus niger

Lubbers, R. J. M., Dilokpimol, A., Peng, M., Visser, J., Makela, M. R., Hilden, K. S. & de Vries, R. P., 2 dec 2019, I : ACS Sustainable Chemistry & Engineering. 7, 23, s. 19081-19089 19 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Draft genome sequences of three monokaryotic isolates of the white-rot basidiomycete fungus Dichomitus squalens

Casado López, S., Peng, M., Daly, P., Andreopoulos, B., Pangilinan, J., Lipzen, A., Riley, R., Ahrendt, S., Ng, V., Barry, K., Daum, C., Grigoriev, I. V., Hilden, S. K., Mäkelä, M. R. & de Vries, R. P., 2 maj 2019, I : Microbiology Resource Announcements. 8, 18, 3 s., e00264-19.

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Drivers of phytoplankton production and community structure in nutrient-poor estuaries receiving terrestrial organic inflow

Paczkowska, J., Rowe, O. F., Figueroa, D. & Andersson, A., okt 2019, I : Marine Environmental Research. 151, 10 s., 104778.

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Dynamics of Protein Accumulation from the 3 ' End of Viral RNA Are Different from Those in the Rest of the Genome in Potato Virus A Infection

Saha, S., Hafren, A. & Makinen, K., okt 2019, I : Journal of Virology. 93, 19, 18 s., ARTN e00721-19.

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Effects of allochthonous dissolved organic matter input on microbial composition and nitrogen cycling genes at two contrasting estuarine sites

Happel, E. M., Trine, M., Teikari, J. E., Huchaiah, V., Alneberg, J., Andersson, A. F., Sivonen, K., Middelboe, M., Kisand, V. & Riemann, L., sep 2019, I : FEMS Microbiology Ecology. 95, 9, s. 1-10 10 s., 123.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review