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2019

Alternative Biosynthetic Starter Units Enhance the Structural Diversity of Cyanobacterial Lipopeptides

Mares, J., Hajek, J., Urajova, P., Kust, A., Jokela, J., Saurav, K., Galica, T., Capkova, K., Mattila, A., Haapaniemi, E., Permi, P., Mysterud, I., Skulberg, O. M., Karlsen, J., Fewer, D. P., Sivonen, K., Tonnesen, H. H. & Hrouzek, P., feb 2019, I : Applied and Environmental Microbiology. 85, 4, 17 s., UNSP e02675-18.

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An atypical Bacillus anthracis infection in a bull-A potential occupational health hazard

Friman, M., Kakko, L., Constantin, C., Simojoki, H., Andersson, M. A., Nagy, S., Salonen, H. & Andersson, M., 10 aug 2019, I : Reproduction in Domestic Animals. 5 s.

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Antibacterial polymer fibres by rosin compounding and melt-spinning

Kanerva, M., Puolakka, A., Takala, T. M., Elert, A. M., Mylläri, V., Jönkkäri, I., Sarlin, E., Seitsonen, J., Ruokolainen, J., Saris, P. & Vuorinen, J., 8 maj 2019, I : Materials Today Communications.

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Antibiotic Resistance Genes in the Human-Impacted Environment: A One Health Perspective

Tiedje, J. M., Wang, F., Manaia, C. M., Virta, M., Sheng, H., Ma, L., Zhang, T. & Topp, E., jun 2019, I : Pedosphere. 29, 3, s. 273-282 10 s.

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Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence

Parnanen, K. M. M., Narciso-da-Rocha, C., Kneis, D., Berendonk, T. U., Cacace, D., Thi Thuy Do, Elpers, C., Fatta-Kassinos, D., Henriques, I., Jaeger, T., Karkman, A., Luis Martinez, J., Michael, S. G., Michael-Kordatou, I., O'Sullivan, K., Rodriguez-Mozaz, S., Schwartz, T., Sheng, H., Sorum, H., Stedtfeld, R. D. & 6 andraTiedje, J. M., Varela Della Giustina, S., Walsh, F., Vaz-Moreira, I., Virta, M. & Manaia, C. M., mar 2019, I : Science Advances. 5, 3, 10 s., 9124.

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Cellulolytic activity of brown-rot Antrodia sinuosa at the initial stage of cellulose degradation

Sugano, J., Linnakoski, R., Huhtinen, S., Pappinen, A., Niemela, P. & Asiegbu, F. O., jul 2019, I : Holzforschung : international journal of the biology, chemistry, physics and technology of wood. 73, 7, s. 673-680 8 s.

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Characterization of the interaction of the antifungal and cytotoxic cyclic glycolipopeptide hassallidin with sterol-containing lipid membranes.

Humisto, A., Jokela, J., Teigen, K., Wahlsten, M., Permi, P., Sivonen, K. & Herfindal, L., 1 aug 2019, I : Biochimica et Biophysica Acta. Biomembranes. 1861, s. 1510-1521 11 s.

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Dehydroabietylamine-Based Cellulose Nanofibril Films: A New Class of Sustainable Biomaterials for Highly Efficient, Broad-Spectrum Antimicrobial Effects

Hassan, G. A. M. S., Forsman, N., Wan, X., Keurulainen, L., Bimbo, L. M., Johansson, L-S., Sipari, N., Yli-Kauhaluoma, J. T., Zimmermann, R., Stehl, S., Werner, C., Saris, P. E. J., Österberg, M. & Moreira, V. M., 4 mar 2019, I : ACS Sustainable Chemistry & Engineering. 7, 5, s. 5002-5009 8 s.

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Draft genome sequences of three monokaryotic isolates of the white-rot basidiomycete fungus Dichomitus squalens

Casado López, S., Peng, M., Daly, P., Andreopoulos, B., Pangilinan, J., Lipzen, A., Riley, R., Ahrendt, S., Ng, V., Barry, K., Daum, C., Grigoriev, I. V., Hilden, S. K., Mäkelä, M. R. & de Vries, R. P., 2019, (!!Accepted/In press) I : Microbiology Resource Announcements.

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Drivers of phytoplankton production and community structure in nutrient-poor estuaries receiving terrestrial organic inflow

Paczkowska, J., Rowe, O. F., Figueroa, D. & Andersson, A., 21 aug 2019, I : Marine Environmental Research.

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Effects of allochthonous DOM input on microbial composition and nitrogen cycling genes at two contrasting estuarine sites

Happel, E. M., Trine, M., Teikari, J., Huchaiah, V., Alneberg, J., Andersson, A. F., Sivonen, K., Middelboe, M., Kisand, V. & Riemann, L., 2019, (!!Accepted/In press) I : FEMS Microbiology Ecology.

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Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments

Karkman, A., Parnanen, K. & Larsson, D. G. J., 8 jan 2019, I : Nature Communications. 10, 8 s., 80.

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Field-compatible protocol for detecting tetracyclines with bioluminescent bioreporters without pipetting steps

Muurinen, J., Pasupulate, A., Lappalainen, J. & Virta, M., mar 2019, I : Luminescence. 34, 2, s. 249-254 6 s.

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Frequency of virus-resistant hosts determines experimental community dynamics.

Coloma, S. E., Gaedge, U., Sivonen, A. K. & Hiltunen, T. J., jan 2019, I : Ecology. 100, 1, s. 1-9 9 s., e02554.

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Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

Mäkinen, M., Kuuskeri, J., Laine, P., Smolander, O-P., Kovalchuk, A., Zeng, Z., Asiegbu, F., Paulin, L., Auvinen, P. & Lundell, T., 28 maj 2019, I : BMC Genomics. 20, 22 s., 430.

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Identification and structural analysis of cereal arabinoxylan-derived oligosaccharides by negative ionization HILIC-MS/MS

Juvonen, M. K., Kotiranta, M., Jokela, J. K., Tuomainen, P. & Tenkanen, T. M., 1 mar 2019, I : Food Chemistry. 275, s. 176-185 10 s.

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Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315

Teikari, J., Vicentini Popin, R., Hou, S., Wahlsten, M., Hess, W. R. & Sivonen, K., 20 mar 2019, I : Scientific Reports. 9, 13 s., 4888.

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Interaction between tannins and fungal necromass stabilizes fungal residues in boreal forest soils

Adamczyk, B., Sietio, O-M., Biasi, C. & Heinonsalo, J., jul 2019, I : New Phytologist. 223, 1, s. 16-21 6 s.

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Midbiotics: conjugative plasmids for genetic engineering of natural gut flora

Ruotsalainen, P., Penttinen, R., Mattila, S. & Jalasvuori, M., 5 apr 2019, I : Gut Microbes. s. 1-11 11 s.

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Occurrence of sul and tet(M) genes in bacterial community in Japanese marine aquaculture environment throughout the year: Profile comparison with Taiwanese and Finnish aquaculture waters

Suzuki, S., Nakanishi, S., Tamminen, M., Yokokawa, T., Sato-Takabe, Y., Ohta, K., Chou, H-Y., Muziasari, W. I. & Virta, M., 15 jun 2019, I : Science of the Total Environment. 669, s. 649-656 8 s.

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Predator coevolution and prey trait variability determine species coexistence

Scheued, T., Cairns, J., Becks, L. & Hiltunen, T., 1 maj 2019, I : Proceedings of the Royal Society B. Biological Sciences. 286, 1902, 9 s., 20190245.

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Separate domains of G3BP promote efficient clustering of alphavirus replication complexes and recruitment of the translation initiation machinery

Götte, B., Panas, M. D., Hellström, K., Liu, L., Samreen, B., Larsson, O., Ahola, T. & McInerney, G. M., 14 jun 2019, I : PLoS Pathogens. 15, 6, 24 s., 1007842.

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The Biosynthesis of Rare Homo-Amino Acid Containing Variants of Microcystin by a Benthic Cyanobacterium

Shishido, T. K., Jokela, J., Humisto, A., Suurnäkki, S., Wahlsten, M., Oliveria de Alvarenga, D., Sivonen, K. & Fewer, D., 7 maj 2019, I : Marine Drugs. 17, 5, s. 1 16 s., 271.

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The presence of trace components significantly broadens the molecular response of Aspergillus niger to guar gum

Linares, N. C., Di Falco, M., Benoit-Gelber, I., Gruben, B. S., Peng, M., Tsang, A., Mäkelä, M. R. & de Vries, R. P., 25 jul 2019, I : New Biotechnology. 51, s. 57-66 10 s.

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The white-rot basidiomycete Dichomitus squalens shows highly specific transcriptional response to lignocellulose-related aromatic compounds

Kowalczyk, J., Peng, M., Pawlowski, M., Lipzen, A., Ng, V., Singan, V., Wang, M., Grigoriev, I. V. & Mäkelä, M., 2019, (!!Accepted/In press) I : Frontiers in Bioengineering and Biotechnology.

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Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR

Qin, H., Wang, S., Feng, K., He, Z., Virta, M. P. J., Hou, W., Dong, H. & Deng, Y., 4 maj 2019, I : Microbiome. 7, 12 s., 71.

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2018

Archaea are prominent members of the prokaryotic communities colonizing common forest mushrooms

Rinta-Kanto, J. M., Pehkonen, K., Sinkko, H., Tamminen, M. V. & Timonen, S., okt 2018, I : Canadian Journal of Microbiology. 64, 10, s. 716-726 11 s.

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Biosynthesis of microcystin hepatotoxins in the cyanobacterial genus Fischerella

Heck, K., Alvarenga, D. O., Shishido, T. K., Varani, A. M., Dorr, F. A., Pinto, E., Rouhiainen, L., Jokela, J., Sivonen, K. & Fiore, M. F., jan 2018, I : Toxicon. 141, s. 43-50 8 s.

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Black Queen Evolution and Trophic Interactions Determine Plasmid Survival after the Disruption of the Conjugation Network

Cairns, J., Koskinen, K., Penttinen, R., Patinen, T., Hartikainen, A., Jokela, R., Ruusulehto, L., Viitamäki, S., Mattila, S., Hiltunen, T. & Jalasvuori, M., 2 okt 2018, I : mSystems. 3, 5, 14 s., e00104-18.

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Characterization of a feruloyl esterase from Aspergillus terreus facilitates the division of fungal enzymes from Carbohydrate Esterase family 1 of the carbohydrate-active enzymes (CAZy) database

Mäkelä, M. R., Dilokpimol, A., Koskela, S. M., Kuuskeri, J., de Vries, R. P. & Hilden, K., sep 2018, I : Microbial Biotechnology. 11, 5, s. 869-880 12 s.

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Characterization of a feruloyl esterase from Aspergillus terreus facilitates the division of fungal enzymes from Carbohydrate Esterase family 1 of the CAZy database

Mäkelä, M. R., Dilokpimol, A., Koskela, S. M., Kuuskeri, J. T., de Vries, R. & Hilden, S. K., 2018, (!!Accepted/In press) I : Microbial Biotechnology.

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Co-expression of Nisin Z and Leucocin C as a Basis for Effective Protection Against Listeria monocytogenes in Pasteurized Milk

Fu, Y., Qiao, W., Zhu, D., Wang, X., Liu, F., Xu, H., Saris, P. E. J., Kuipers, O. & Qiao, M., 23 mar 2018, I : Frontiers in Microbiology. 2018 / 9 , s. 1 - 11 11 s., 547.

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Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes

Peng, M., Aguilar-Pontes, M. V., Hainaut, M., Henrissat, B., Hilden, K., Mäkelä, M. R. & de Vries, R. P., mar 2018, I : Fungal Genetics and Biology. 112, s. 40-46 7 s.

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Comparative Genomics of the Baltic Sea Toxic Cyanobacteria Nodularia spumigena UHCC 0039 and Its Response to Varying Salinity

Teikari, J. E., Hou, S., Wahlsten, M., Hess, W. R. & Sivonen, K., 8 mar 2018, I : Frontiers in Microbiology. 9, 13 s., 356.

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Construction and characterization of synthetic bacterial community for experimental ecology and evolution

Cairns, J., Jokela, R., Hultman, J., Tamminen, M., Virta, M. & Hiltunen, T., 14 aug 2018, I : Frontiers in Genetics. 9, 12 s., 312.

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Contribution of YthA, a PspC family transcriptional regulator to Lactococcus lactis F44 acid tolerance and nisin yield: a transcriptomic approach

Wu, H., Liu, J., Miao, S., Zhao, Y., Zhu, H., Qiao, M., Saris, P. E. J. & Qiao, J., mar 2018, I : Applied and Environmental Microbiology. 84, 6, s. 1-20 20 s., UNSP e02483-17.

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Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change

Markussen, T., Happel, E. M., Teikari, J. E., Huchaiah, V., Alneberg, J., Andersson, A. F., Sivonen, A. K., Riemann, L., Middelboe, M. & Kisand, V., 1 aug 2018, I : Environmental Microbiology. 20, 8, s. 3083-3099 17 s.

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Dichomitus squalens partially tailors its molecular responses to the composition of solid wood

Daly, P., Lopez, S. C., Peng, M., Lancefield, C. S., Purvine, S. O., Kim, Y-M., Zink, E. M., Dohnalkova, A., Singan, V. R., Lipzen, A., Dilworth, D., Wang, M., Ng, V., Robinson, E., Orr, G., Baker, S. E., Bruijnincx, P. C. A., Hilden, K. S., Grigoriev, I. V., Mäkelä, M. R. & 1 andrade Vries, R. P., nov 2018, I : Environmental Microbiology. 20, 11, s. 4141-4156 16 s.

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Discovery of a Pederin Family Compound in a Nonsymbiotic Bloom-Forming Cyanobacterium

Kust, A., Mares, J., Jokela, J., Urajova, P., Hajek, J., Saurav, K., Voracova, K., Fewer, D. P., Haapaniemi, E., Permi, P., Rehakova, K., Sivonen, K. & Hrouzek, P., maj 2018, I : ACS Chemical Biology. 13, 5, s. 1123-1129 7 s.

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Disruption of the methionine cycle and reduced cellular gluthathione levels underlie potex-potyvirus synergism in Nicotiana benthamiana

De, S., Chavez-Calvillo, G., Wahlsten, M. & Mäkinen, K., aug 2018, I : Molecular Plant Pathology. 19, 8, s. 1820-1835 16 s.

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Draft genome sequence of the basidiomycete white-rot fungus Phlebia centrifuga

Mäkelä, M. R., Peng, M., Granchi, Z., Chin-A-Woeng, T., Hegi, R., van Pelt, S., Ahrendt, S., Riley, R., Heinaut, M., Henrissat, B., Grigoriev, I., de Vries, R. & Hilden, S. K., apr 2018, I : Genome Announcements. 6, 14, 2 s., UNSP e01414-17.

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Dual-stressor selection alters eco-evolutionary dynamics in experimental communities

Hiltunen, T., Cairns, J., Frickel, J., Jalasvuori, M., Laakso, J., Kaitala, V., Kuenzel, S., Karakoc, E. & Becks, L., dec 2018, I : Nature Ecology & Evolution. 2, 12, s. 1974-1981 8 s.

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Effect of resource availability on evolution of virulence and competition in an environmentally transmitted pathogen

Pulkkinen, K., Pekkala, N., Ashrafi, R., Hamalainen, D. M., Nkembeng, A. N., Lipponen, A., Hiltunen, T., Valkonen, J. K. & Taskinen, J., maj 2018, I : FEMS Microbiology Ecology. 94, 5, 12 s., 060.

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Effects of Organic Pollutants on Bacterial Communities Under Future Climate Change Scenarios

Rodríguez, J., Gallampois, C. M. J., Timonen, S., Andersson, A., Sinkko, H., Haglund, P., Berglund, Å. M. M., Ripszam, M., Figueroa, D., Tysklind, M. & Rowe, O., 30 nov 2018, I : Frontiers in Microbiology. 9, 21 s., 2926.

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Ericoid plant species and Pinus sylvestris shape fungal communities in their roots and surrounding soil

Sietio, O-M., Tuomivirta, T., Santalahti, M., Kiheri, H., Timonen, S., Sun, H., Fritze, H. & Heinonsalo, J., apr 2018, I : New Phytologist. 218, 2, s. 738-751 14 s.

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