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2010

Screening for biohydrogen production by cyanobacteria isolated from the Baltic Sea and Finnish lakes

Allahverdiyeva, Y., Leino, H., Saari, L., Fewer, D. P., Shunmugam, S., Sivonen, K. & Aro, E-M., 2010, I : International Journal of Hydrogen Energy. 35, 3, s. 1117-1127 11 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Single gene-based distinction of individual microbial genomes from a mixed population of microbial cells

Tamminen, M. & Virta, M., 2010, I : Nature Precedings. 13.8.2010

Forskningsoutput: TidskriftsbidragArtikelVetenskaplig

Two Alternative Starter Modules for the Non-Ribosomal Biosynthesis of Specific Anabaenopeptin Variants in Anabaena (Cyanobacteria)

Rouhiainen, L., Jokela, J., Fewer, D. P., Urmann, M. & Sivonen, K., 2010, I : Chemistry & Biology. 17, 3, s. 265-273 9 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

White wines as possible meat marinade ingredients possess antimicrobial potential against Campylobacter

Isohanni, P., Alter, T., Saris, P. E. & Lyhs, U., 2010, I : Poultry Science. 89, 12, s. 2704-2710 7 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

2009

Acyloxymethyl esterification of Nodularin-R and Microcystin-LA produces inactive protoxins that become reactivated and produce apoptosis inside intact cells

Herfindal, L., Kasprzykowski, F., Schwede, F., ankiewicz, L., Fladmark, K. E., ukomska, J., Wahlsten, M., Sivonen, K., Grzonka, Z., Jastorff, B. & Døskeland, S. O., 2009, I : Journal of Medicinal Chemistry. 52, 18, s. 5758-5762 5 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

An efflux transporter PbrA and a phosphatase PbrB cooperate in a lead-resistance mechanism in bacteria

Hynninen, A., Touzé, T., Pitkänen, L., Mengin-Lecreulx, D. & Virta, M. P. J., 2009, I : Molecular Microbiology. 74, 2, s. 384-394 11 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Betulin-derived compounds as inhibitors of alphavirus replication

Pohjala, L., Alakurtti, S., Ahola, T., Yli-Kauhaluoma, J. & Tammela, P., 2009, I : Journal of Natural Products. 72, 11, s. 1917-1926 10 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Continuous nisin production with bioengineered Lactococcus lactis strains

Simsek, O., Akkoc, N., Con, A. H., Ozcelik, F., Saris, P. E. J. & Akcelik, M., 2009, I : Journal of Industrial Microbiology and Biotechnology. 36, 6, s. 863-871 9 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Culture-independent evidence for the persistent presence and genetic diversity of microcystin-producing Anabaena (Cyanobacteria) in the Gulf of Finland

Fewer, D. P., Köykkä, M., Halinen, K., Jokela, J., Lyra, C. & Sivonen, K., 2009, I : Environmental Microbiology. 11, 4, s. 855-866 12 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Cycle changing the medium results in increased nisin productivity per cell in Lactococcus lactis

Simsek, O. & Saris, P. E. J., 2009, I : Biotechnology Letters. 31, 3, s. 415-421 7 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Development of a denaturation/renaturation-based production process for ferritin nanoparticles

Jääskeläinen, A., Soukka, T., Lamminmäki, U., Korpimäki, T. & Virta, M., 2009, I : Biotechnology and Bioengineering (Print). 102, 4, s. 1012-1024 13 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Differential activities of cellular and viral macro domain proteins in binding of ADP-ribose metabolites

Neuvonen, K. M. & Ahola, T., 2009, I : Journal of Molecular Biology. 385, 1, s. 212-225 14 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Discovering protein kinase C active plants growing in Finland utilizing automated bioassay combined to LC/MS

Galkin, A., Jokela, J., Wahlsten, M., Tammela, P., Sivonen, K. & Vuorela, P., 2009, I : Natural Product Communications. 4, 1, s. 139-142 4 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Functional screen reveals SARS coronavirus nonstructural protein nsp14 as a novel cap N7 methyltransferase

Chen, Y., Cai, H., Pan, J. A., Xiang, N., Tien, P., Ahola, T. & Guo, D., 2009, I : Proceedings of the National Academy of Sciences of the United States of America. 106, 9, s. 3484-3489 6 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

High diversity of cultivable heterotrophic bacteria in association with cyanobacterial water blooms

Berg, K., Lyra, C., Sivonen, K., Paulin, L., Suomalainen, S., Tuomi, P. & Rapala, J., 2009, I : ISME Journal. 3, 3, s. 314-325 12 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Identifying the Source of Unknown Microcystin Genes and Predicting Microcystin Variants by Comparing Genes within Uncultured Cyanobacterial Cells

Allender, C. J., LeCleir, G. R., Rinta-Kanto, J. M., Small, R. L., Satchwell, M. F., Boyer, G. L. & Wilhelm, S. W., 2009, I : Applied and Environmental Microbiology. 75, s. 3598-3604 7 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Influence of growth conditions on the nisin production of bioengineered Lactococcus lactis strains

Simsek, O., Con, A. H., Akkoc, N., Saris, P. E. J. & Akcelik, M., 2009, I : Journal of Industrial Microbiology and Biotechnology. 36, 4, s. 481-490 10 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Interaction of a potyviral VPg with anionic phospholipid vesicles

Rantalainen, K., Christensen, P. A., Hafren, A., Otzen, D. E., Kalkkinen, N. & Mäkinen, K., 2009, I : Virology. 395, 1, s. 114-120 7 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Isolation of lactic acid bacteria from Lighvan cheese, a semihard cheese made from raw sheep milk in Iran

Navidghasemizad, S., Hesari, J., Saris, P. & Nahaei, M. R., 2009, I : International Journal of Dairy Technology Online. 62, 2, s. 260-264 5 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Isolation of sensitive nisin-sensing GFP[sub uv] bioassay Lactococcus lactis strains using FACS

Abbas Hilmi, H. T., Hakkila, K. M. & Saris, P. E., 2009, I : Biotechnology Letters. 31, 1, s. 119-122 4 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Lentiviral vector-derived shRNAs confer enhanced suppression of Semliki forest virus replication in BHK-21 cells compared to shRNAs expressed from plasmids

Zhang, K., Chen, Y., Pan, J., Ahola, T. & Guo, D., apr 2009, I : Biotechnology Letters. 31, 4, s. 501-508 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Microcystin Production in the Tripartite Cyanolichen Peltigera leucophlebia

Kaasalainen, U., Jokela, J., Fewer, D. P., Sivonen, K. & Rikkinen, J., 2009, I : Molecular Plant - Microbe Interactions. 22, 6, s. 695-702 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Mu transposition complex mutagenesis in Lactococcus lactis: identification of genes affecting nisin production

Wu, Z., Xuanyuan, Z., Li, R., Jiang, D., Li, C., Xu, H., Bai, Y., Zhang, X., Turakainen, H., Saris, P. E. J., Savilahti, H. & Qiao, M., 2009, I : Journal of Applied Microbiology. 106, 1, s. 41-48 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Production of a recombinant full-length collagen type I -1 and of a 45-kDa collagen type I -1 fragment in barley seeds

Eskelin, K., Ritala, A., Suntio, T., Blumer, S., Holkeri, H., Wahlström, E. H., Baez, J., Mäkinen, K. & Nuutila, A. M., 2009, I : Plant biotechnology journal. 7, 7, s. 657-672 16 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Production of a recombinant full-length collagen type I alpha-1 and of a 45-kDa collagen type I alpha-1 fragment in barley seeds.

Eskelin K, Ritala A, Suntio T, Blumer S, Holkeri H, Wahlström EH, Baez J, Mäkinen K, Maria NA, 2009, I : Plant biotechnology journal.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Protein lysate microarray analysis to identify microRNAs regulating estrogen receptor signaling in breast cancer cell lines

Leivonen, S-K., Mäkelä, R., Ostling, P., Kohonen, P., Haapa-Paananen, S., Kleivi, K., Enerly, E., Aakula, A., Hellström, K., Sahlberg, N., Kristensen, V. N., Borresen-Dale, A-L., Saviranta, P., Perälä, M. & Kallioniemi, O., 2009, I : Oncogene. 28, 44, s. 3926-3936 11 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Survival of nisin activity in intestinal environment

Reunanen, J. & Saris, P. E. J., 2009, I : Biotechnology Letters. 31, 8, s. 1229-1232 4 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

The crystal structures of chikungunya and venezuelan equine encephalitis virus nsP3 macro domains define a conserved adenosine binding pocket

Malet, H., Coutard, B., Jamal, S., Dutartre, H., Papageorgiou, N., Neuvonen, K. M., Ahola, T., Forrester, N., Gould, E. A., Lafitte, D., Ferron, F., Lescar, J., Gorbalenya, A. E., de Lamballerie, X. & Canard, B., 2009, I : Journal of Virology. 83, 13, s. 6534-6545 12 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

The non-ribosomal assembly and frequent occurrence of the protease inhibitors spumigins in the bloom-forming cyanobacterium Nodularia spumigena

Fewer, D. P., Jokela, J., Rouhiainen, L., Wahlsten, M., Koskenniemi, K., Stal, L. J. & Sivonen, K., 2009, I : Molecular Microbiology. 73, 5, s. 924-937 14 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Widespread occurrence and lateral transfer of the cyanobactin biosynthesis gene cluster in cyanobacteria

Leikoski, N., Fewer, D. P. & Sivonen, K., 2009, I : Applied and Environmental Microbiology. 75, 3, s. 853-857 5 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

2008

A luciferase-based screening method for inhibitors of alphavirus replication applied to nucleoside analogues

Pohjala, L., Barai, V., Azhayev, A., Lapinjoki, S. & Ahola, T., 2008, I : Antiviral Research. 78, 3, s. 215-222 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

A sensitive recombinant cell-based bioluminescent assay for detection of androgen-like compounds

Michelini, E., Cevenini, L., Mezzanotte, L., Leskinen, P., Virta, M., Karp, M. & Roda, A., 2008, I : Nature Protocols. 3, 12, s. 1895 - 1902

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Atomic force microscopy of potato virus A

Obraztsova, E. A., Kalinina, N. O., Taliansky, M. E., Gabrenaite-Verkhovskaya, R., Mäkinen, K. & Yaminsky, I. V., 2008, I : Russian Academy of Sciences. Colloid Journal. 70, s. 199-201 3 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Biologically produced bifunctional recombinant protein nanoparticles for immunoassays

Jääskelainen, A., Harinen, R-R., Soukka, T., Lamminmäki, U., Korpimäki, T. & Virta, M., 2008, I : Analytical Chemistry. 80, 3, s. 583-587 5 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants

Gabrenaite-Verhovskaya, R., Andreev, I. A., Kalinina, N. O., Torrance, L., Taliansky, M. E. & Mäkinen, K., 2008, I : Journal of General Virology. 89, 3, s. 829-838 10 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Detecting AhR ligands in sedimets using bioluminescent reporter yeast

Leskinen, P., Hilscherova, K., Sidlova, T., Kiviranta, H., Pessala, P., Salo, S., Verta, M. & Virta, M., 2008, I : Biosensors & Bioelectronics. 23, 12, s. 1850-1855 6 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Evidence for positive selection acting on microcystin synthetase adenylation domains in three cyanobacterial genera

Tooming-Klunderud, A., Fewer, D. P., Rohrlack, T., Jokela, J., Rouhiainen, L., Sivonen, K., Kristensen, T. & Jakobsen, K. S., 2008, I : BMC Evolutionary Biology. 8, 256, [20] s

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Expression of the nodularin synthetase genes in the Baltic Sea bloom-former cyanobacterium Nodularia spumigena strain AV1

Jonasson, S., Vintila, S., Sivonen, K. & El-Shehawy, R., 2008, I : FEMS Microbiology Ecology. 65, 1, s. 31-39 9 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Genetic diversity in strains of the genus Anabaena isolated from planktonic and benthic habitats of the Gulf of Finland (Baltic Sea)

Halinen, K., Fewer, D. P., Sihvonen, L. M., Lyra, C., Eronen, E. & Sivonen, K., 2008, I : FEMS Microbiology Ecology. 64, s. 199-208 10 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Hydrophobic derivatives of 5-(hydroxymethyl)isophthalic acid that selectively induce apoptosis in leukemia cells but not in fibroblasts

Galkin, A., Surakka, A., Boije af Gennäs, G., Ruotsalainen, T., Kreander, K., Tammela, P., Sivonen, K., Yli-Kauhaluoma, J. & Vuorela, P., 2008, I : Drug Development Research. 69, 4, s. 185-195 11 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Identification of hepatotoxin-producing cyanobacteria by DNA-chip

Rantala, A., Rizzi, E., Castiglioni, B., de Bellis, G. & Sivonen, K., 2008, I : Environmental Microbiology. 10, 3, s. 653-664 12 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Inhibition of angiotensin converting enzyme I caused by autolysis of potato proteins by enzymatic activities confined to different parts of the potato tuber

Mäkinen, S., Kelloniemi, J., Pihlanto, A., Mäkinen, K., Korhonen, H., Hopia, A., Valkonen, J. P. T. & Valkonen, J., 2008, I : Journal of Agricultural and Food Chemistry. 56, 21, s. 9875-9883 9 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Interplay of different transporters in the mediation of divalent heavy metal resistance in Pseudomonas putida KT2440

Leedjärv, A., Ivask, A. & Virta, M., 2008, I : Journal of Bacteriology. 190, 8, s. 2680-2689 10 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Molecular defects caused by temperature-sensitive mutations in Semliki Forest virus nsP1

Lulla, V., Sawicki, D. L., Sawicki, S. G., Lulla, A., Merits, A. & Ahola, T., 2008, I : Journal of Virology. 82, 18, s. 9236-9244 9 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Natural occurrence of microcystin synthetase deletion mutants capable of producing microcystins in strains of the genus Anabaena (Cyanobacteria)

Fewer, D. P., Tooming-Klunderud, A., Jokela, J., Wahlsten, M., Rouhiainen, L., Kristensen, T., Rohrlack, T., Jakobsen, K. S. & Sivonen, K., 2008, I : Microbiology. 154, 4, s. 1007-1014 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Phosphorylation analysis of plant viral proteins

Makinen, K. M. & Ivanov, K. I., 2008, I : Methods in molecular biology. 451, s. 339-359 21 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic core

Rantalainen, K. I., Uversky, V. N., Permi, P., Kalkkinen, N., Dunker, A. K. & Mäkinen, K., 2008, I : Virology. 377, 2, s. 280-288 9 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Preserving accuracy in GenBank

Bidartondo, M. I., Bruns, T. D., Blackwell, M., Edwards, I., Taylor, A. F. S., Horton, T., Zhang, N., Koljalg, U., May, G., Kuyper, T. W., Bever, J. D., Gilbert, G., Taylor, J. W., DeSantis, T. Z., Pringle, A., Borneman, J., Thorn, G., Berbee, M., Mueller, G. M., Andersen, G. L. & 237 andraVellinga, E. C., Branco, S., Anderson, I., Dickie, I. A., Avis, P., Timonen, S., Kjoller, R., Lodge, D. J., Bateman, R. M., Purvis, A., Crous, P. W., Hawkes, C., Barraclough, T., Burt, A., Nilsson, R. H., Larsson, K-H., Alexander, I., Moncalvo, J-M., Berube, J., Spatafora, J., Lumbsch, H. T., Blair, J. E., Suh, S-O., Pfister, D. H., Binder, M., Boehm, E. W., Kohn, L., Mata, J. L., Dyer, P., Sung, G-H., Dentinger, B., Simmons, E. G., Baird, R. E., Volk, T. J., Perry, B. A., Kerrigan, R. W., Campbell, J., Rajesh, J., Reynolds, D. R., Geiser, D., Humber, R. A., Hausmann, N., Szaro, T., Stajich, J., Gathman, A., Peay, K. G., Henkel, T., Robinson, C. H., Pukkila, P. J., Nguyen, N. H., Villalta, C., Kennedy, P., Bergemann, S., Aime, M. C., Kauff, F., Porras-Alfaro, A., Gueidan, C., Beck, A., Andersen, B., Marek, S., Crouch, J. A., Kerrigan, J., Ristaino, J. B., Hodge, K. T., Kuldau, G., Samuels, G. J., Raja, H. A., Voglmayr, H., Gardes, M., Janos, D. P., Rogers, J. D., Cannon, P., Woolfolk, S. W., Kistler, H. C., Castellano, M. A., Maldonado-Ramirez, S. L., Kirk, P. M., Farrar, J. J., Osmundson, T., Currah, R. S., Vujanovic, V., Chen, W., Korf, R. P., Atallah, Z. K., Harrison, K. J., Guarro, J., Bates, S. T., Bonello, P. E., Bridge, P., Schell, W., Rossi, W., Stenlid, J., Frisvad, J. C., Miller, R. M., Baker, S. E., Hallen, H. E., Janso, J. E., Wilson, A. W., Conway, K. E., Egerton-Warburton, L., Wang, Z., Eastburn, D., Ho, W. W. H., Kroken, S., Stadler, M., Turgeon, G., Lichtwardt, R. W., Stewart, E. L., Wedin, M., Li, D-W., Uchida, J. Y., Jumpponen, A., Deckert, R. J., Beker, H. J., Rogers, S. O., Xu, J., Johnston, P., Shoemaker, R. A., Liu, M., Marques, G., Summerell, B., Sokolski, S., Thrane, U., Widden, P., Bruhn, J. N., Bianchinotti, V., Tuthill, D., Baroni, T. J., Barron, G., Hosaka, K., Jewell, K., Piepenbring, M., Sullivan, R., Griffith, G. W., Bradley, S. G., Aoki, T., Yoder, W. T., Ju, Y-M., Berch, S. M., Trappe, M., Duan, W., Bonito, G., Taber, R. A., Coelho, G., Bills, G., Ganley, A., Agerer, R., Nagy, L., Roy, B. A., Laessoe, T., Hallenberg, N., Tichy, H-V., Stalpers, J., Langer, E., Scholler, M., Krueger, D., Pacioni, G., Poeder, R., Pennanen, T., Capelari, M., Nakasone, K., Tewari, J. P., Miller, A. N., Decock, C., Huhndorf, S., Wach, M., Vishniac, H. S., Yohalem, D. S., Smith, M. E., Glenn, A. E., Spiering, M., Lindner, D. L., Schoch, C., Redhead, S. A., Ivors, K., Jeffers, S. N., Geml, J., Okafor, F., Spiegel, F. W., Dewsbury, D., Carroll, J., Porter, T. M., Pashley, C., Carpenter, S. E., Abad, G., Voigt, K., Arenz, B., Methven, A. S., Schechter, S., Vance, P., Mahoney, D., Kang, S., Rheeder, J. P., Mehl, J., Greif, M., Ngala, G. N., Ammirati, J., Kawasaki, M., Gwo-Fang, Y., Matsumoto, T., Smith, D., Koenig, G., Luoma, D., May, T., Leonardi, M., Sigler, L., Taylor, D. L., Gibson, C., Sharpton, T., Hawksworth, D. L., Dianese, J. C., Trudell, S. A., Paulus, B., Padamsee, M., Callac, P., Lima, N., White, M., Barreau, C., Juncai, M. A., Buyck, B., Rabeler, R. K., Liles, M. R., Estes, D., Carter, R., Herr, J. M., Chandler, G., Kerekes, J., Cruse-Sanders, J., Galan Marquez, R., Horak, E., Fitzsimons, M., Doering, H., Yao, S., Hynson, N., Ryberg, M., Arnold, A. E. & Hughes, K., 2008, I : Science Progress. 319, s. 1616-1616 1 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskaplig

Production of a recombinant industrial protein using barley cell cultures

Ritala, A., Wahlström, E. H., Holkeri, H., Hafren, A., Mäkeläinen, K., Baez, J., Mäkinen, K. & Nuutila, A. M., 2008, I : Protein Expression and Purification. 59, 2, s. 274-281 8 s.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review