Fast and flexible bacterial genomic epidemiology with PopPUNK

John A. Lees, Simon R. Harris, Gerry Tonkin-Hill, Rebecca A. Gladstone, Stephanie W. Lo, Jeffrey N. Weiser, Jukka Corander, Stephen D. Bentley, Nicholas J. Croucher

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

Originalspråkengelska
TidskriftGenome Research
Volym29
Utgåva2
Sidor (från-till)304-316
Antal sidor13
ISSN1088-9051
DOI
StatusPublicerad - feb 2019
MoE-publikationstypA1 Tidskriftsartikel-refererad

Vetenskapsgrenar

  • 1182 Biokemi, cell- och molekylärbiologi
  • 111 Matematik

Citera det här

Lees, J. A., Harris, S. R., Tonkin-Hill, G., Gladstone, R. A., Lo, S. W., Weiser, J. N., ... Croucher, N. J. (2019). Fast and flexible bacterial genomic epidemiology with PopPUNK. Genome Research, 29(2), 304-316. https://doi.org/10.1101/gr.241455.118
Lees, John A. ; Harris, Simon R. ; Tonkin-Hill, Gerry ; Gladstone, Rebecca A. ; Lo, Stephanie W. ; Weiser, Jeffrey N. ; Corander, Jukka ; Bentley, Stephen D. ; Croucher, Nicholas J. / Fast and flexible bacterial genomic epidemiology with PopPUNK. I: Genome Research. 2019 ; Vol. 29, Nr. 2. s. 304-316.
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title = "Fast and flexible bacterial genomic epidemiology with PopPUNK",
keywords = "SEQUENCE TYPING SCHEME, POPULATION-STRUCTURE, ESCHERICHIA-COLI, DNA, DIVERSITY, EVOLUTION, RESISTANCE, ALGORITHM, VIRULENCE, SELECTION, 1182 Biochemistry, cell and molecular biology, 111 Mathematics",
author = "Lees, {John A.} and Harris, {Simon R.} and Gerry Tonkin-Hill and Gladstone, {Rebecca A.} and Lo, {Stephanie W.} and Weiser, {Jeffrey N.} and Jukka Corander and Bentley, {Stephen D.} and Croucher, {Nicholas J.}",
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language = "English",
volume = "29",
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Lees, JA, Harris, SR, Tonkin-Hill, G, Gladstone, RA, Lo, SW, Weiser, JN, Corander, J, Bentley, SD & Croucher, NJ 2019, 'Fast and flexible bacterial genomic epidemiology with PopPUNK', Genome Research, vol. 29, nr. 2, s. 304-316. https://doi.org/10.1101/gr.241455.118

Fast and flexible bacterial genomic epidemiology with PopPUNK. / Lees, John A.; Harris, Simon R.; Tonkin-Hill, Gerry; Gladstone, Rebecca A.; Lo, Stephanie W.; Weiser, Jeffrey N.; Corander, Jukka; Bentley, Stephen D.; Croucher, Nicholas J.

I: Genome Research, Vol. 29, Nr. 2, 02.2019, s. 304-316.

Forskningsoutput: TidskriftsbidragArtikelVetenskapligPeer review

TY - JOUR

T1 - Fast and flexible bacterial genomic epidemiology with PopPUNK

AU - Lees, John A.

AU - Harris, Simon R.

AU - Tonkin-Hill, Gerry

AU - Gladstone, Rebecca A.

AU - Lo, Stephanie W.

AU - Weiser, Jeffrey N.

AU - Corander, Jukka

AU - Bentley, Stephen D.

AU - Croucher, Nicholas J.

PY - 2019/2

Y1 - 2019/2

KW - SEQUENCE TYPING SCHEME

KW - POPULATION-STRUCTURE

KW - ESCHERICHIA-COLI

KW - DNA

KW - DIVERSITY

KW - EVOLUTION

KW - RESISTANCE

KW - ALGORITHM

KW - VIRULENCE

KW - SELECTION

KW - 1182 Biochemistry, cell and molecular biology

KW - 111 Mathematics

U2 - 10.1101/gr.241455.118

DO - 10.1101/gr.241455.118

M3 - Article

VL - 29

SP - 304

EP - 316

JO - Genome Research

JF - Genome Research

SN - 1088-9051

IS - 2

ER -

Lees JA, Harris SR, Tonkin-Hill G, Gladstone RA, Lo SW, Weiser JN et al. Fast and flexible bacterial genomic epidemiology with PopPUNK. Genome Research. 2019 feb;29(2):304-316. https://doi.org/10.1101/gr.241455.118