Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data

Kinza Rian; Marta R. Hidalgo; Cankut Cubuk; Matias M. Falco; Carlos Loucera; Marina Esteban-Medina; Inmaculada Alamo-Alvarez; Maria Pena-Chilet; Joaquin Dopazo

doi:10.1016/j.csbj.2021.05.022

Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data

Kinza Rian, Marta R. Hidalgo, Cankut Cubuk, Matias M. Falco, Carlos Loucera, Marina Esteban-Medina, Inmaculada Alamo-Alvarez, Maria Pena-Chilet, Joaquin Dopazo

Forskningsoutput: Tidskriftsbidrag › Artikel › Vetenskaplig › Peer review

Originalspråk	engelska
Tidskrift	Computational and Structural Biotechnology Journal
Volym	19
Sidor (från-till)	2968-2978
Antal sidor	11
ISSN	2001-0370
DOI	https://doi.org/10.1016/j.csbj.2021.05.022
Status	Publicerad - 2021
Externt publicerad	Ja
MoE-publikationstyp	A1 Tidskriftsartikel-refererad

Vetenskapsgrenar

3111 Biomedicinska vetenskaper
1182 Biokemi, cell- och molekylärbiologi

Åtkomst av dokument

10.1016/j.csbj.2021.05.022

1-s2.0-S2001037021002038-mainSlutlig publicerad version, 2,8 MBLicens: CC BY-NC-ND

Citera det här

Rian, K., Hidalgo, M. R., Cubuk, C., Falco, M. M., Loucera, C., Esteban-Medina, M., Alamo-Alvarez, I., Pena-Chilet, M., & Dopazo, J. (2021). Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data. Computational and Structural Biotechnology Journal, 19, 2968-2978. https://doi.org/10.1016/j.csbj.2021.05.022

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title = "Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data",

keywords = "Signaling pathway, Mathematical modelling, Transcriptomic, Causality, GENE-EXPRESSION, DIFFERENTIAL EXPRESSION, PHENOTYPE, SIGNATURE, DISCOVERY, GENOTYPE, INSIGHTS, CANCERS, PATHS, 3111 Biomedicine, 1182 Biochemistry, cell and molecular biology",

author = "Kinza Rian and Hidalgo, {Marta R.} and Cankut Cubuk and Falco, {Matias M.} and Carlos Loucera and Marina Esteban-Medina and Inmaculada Alamo-Alvarez and Maria Pena-Chilet and Joaquin Dopazo",

year = "2021",

doi = "10.1016/j.csbj.2021.05.022",

language = "English",

volume = "19",

pages = "2968--2978",

journal = "Computational and Structural Biotechnology Journal",

issn = "2001-0370",

publisher = "Chalmers University of Technology",

}

Rian, K, Hidalgo, MR, Cubuk, C, Falco, MM, Loucera, C, Esteban-Medina, M, Alamo-Alvarez, I, Pena-Chilet, M & Dopazo, J 2021, 'Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data', Computational and Structural Biotechnology Journal, vol. 19, s. 2968-2978. https://doi.org/10.1016/j.csbj.2021.05.022

TY - JOUR

T1 - Genome-scale mechanistic modeling of signaling pathways made easy

T2 - A bioconductor/cytoscape/web server framework for the analysis of omic data

AU - Rian, Kinza

AU - Hidalgo, Marta R.

AU - Cubuk, Cankut

AU - Falco, Matias M.

AU - Loucera, Carlos

AU - Esteban-Medina, Marina

AU - Alamo-Alvarez, Inmaculada

AU - Pena-Chilet, Maria

AU - Dopazo, Joaquin

PY - 2021

Y1 - 2021

KW - Signaling pathway

KW - Mathematical modelling

KW - Transcriptomic

KW - Causality

KW - GENE-EXPRESSION

KW - DIFFERENTIAL EXPRESSION

KW - PHENOTYPE

KW - SIGNATURE

KW - DISCOVERY

KW - GENOTYPE

KW - INSIGHTS

KW - CANCERS

KW - PATHS

KW - 3111 Biomedicine

KW - 1182 Biochemistry, cell and molecular biology

U2 - 10.1016/j.csbj.2021.05.022

DO - 10.1016/j.csbj.2021.05.022

M3 - Article

SN - 2001-0370

VL - 19

SP - 2968

EP - 2978

JO - Computational and Structural Biotechnology Journal

JF - Computational and Structural Biotechnology Journal

ER -