Sammanfattning

Comparative genomic information has been used to understand the key transitions of embryophyte
evolution, such as terrestrialization resulting in various innovations driven by genetic changes.
However, how these traits evolved is not yet understood, largely due to a paucity of information
from early divergent groups. In embryophytes, much of the focus has been on understanding
genetic adaptation and molecular evolution of specialized angiosperms. The liverwort Blasia
pusilla, representing one of the basal clades of embryophytes, has been studied to identify the
genetic basis of traits that potentially led to the success of the embryophytes. In the present poster,
we present the first draft assembly of the Blasia pusilla genome, based on single molecule read
sequencing (PACBIO-SMRT). The draft genome has been assembled using 1,781,918 PacBio reads
after filtering contaminating organelle and symbiotic reads from a total of 1,997,826 sequenced
reads. The genome
assembly and comparative assessment of various approaches for assembly will be presented.
Originalspråkengelska
Sidor74
Antal sidor1
StatusPublicerad - 2018
EvenemangEMBO Plant Evolution: New Shores in Land Plant Evolution - Portugal, Lisbon, Portugal
Varaktighet: 20 jun 201823 jun 2018
http://meetings.embo.org/event/18-plant-evo

Workshop

WorkshopEMBO Plant Evolution
Förkortad titelEMBO Plant Evo
LandPortugal
OrtLisbon
Period20/06/201823/06/2018
Internetadress

Vetenskapsgrenar

  • 1183 Växtbiologi, mikrobiologi, virologi

Citera det här

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title = "The first draft genome of Blasia pusilla using SMRT sequencing",
abstract = "Comparative genomic information has been used to understand the key transitions of embryophyteevolution, such as terrestrialization resulting in various innovations driven by genetic changes.However, how these traits evolved is not yet understood, largely due to a paucity of informationfrom early divergent groups. In embryophytes, much of the focus has been on understandinggenetic adaptation and molecular evolution of specialized angiosperms. The liverwort Blasiapusilla, representing one of the basal clades of embryophytes, has been studied to identify thegenetic basis of traits that potentially led to the success of the embryophytes. In the present poster,we present the first draft assembly of the Blasia pusilla genome, based on single molecule readsequencing (PACBIO-SMRT). The draft genome has been assembled using 1,781,918 PacBio readsafter filtering contaminating organelle and symbiotic reads from a total of 1,997,826 sequencedreads. The genomeassembly and comparative assessment of various approaches for assembly will be presented.",
keywords = "1183 Plant biology, microbiology, virology",
author = "Gaurav Sablok and Xiaolan He and Miranto, {Mari Johanna} and Elina Peltomaa and Neil Bell and Paulin, {Lars G{\"o}ran} and P{\'e}ter Poczai and Hyv{\"o}nen, {Jaakko Tapani}",
year = "2018",
language = "English",
pages = "74",
note = "EMBO Plant Evolution : New Shores in Land Plant Evolution, EMBO Plant Evo ; Conference date: 20-06-2018 Through 23-06-2018",
url = "http://meetings.embo.org/event/18-plant-evo",

}

The first draft genome of Blasia pusilla using SMRT sequencing. / Sablok, Gaurav; He, Xiaolan; Miranto, Mari Johanna; Peltomaa, Elina; Bell, Neil; Paulin, Lars Göran; Poczai, Péter; Hyvönen, Jaakko Tapani.

2018. 74 Poster presenterad vid EMBO Plant Evolution, Lisbon, Portugal.

Forskningsoutput: KonferensbidragPosterForskningPeer review

TY - CONF

T1 - The first draft genome of Blasia pusilla using SMRT sequencing

AU - Sablok, Gaurav

AU - He, Xiaolan

AU - Miranto, Mari Johanna

AU - Peltomaa, Elina

AU - Bell, Neil

AU - Paulin, Lars Göran

AU - Poczai, Péter

AU - Hyvönen, Jaakko Tapani

PY - 2018

Y1 - 2018

N2 - Comparative genomic information has been used to understand the key transitions of embryophyteevolution, such as terrestrialization resulting in various innovations driven by genetic changes.However, how these traits evolved is not yet understood, largely due to a paucity of informationfrom early divergent groups. In embryophytes, much of the focus has been on understandinggenetic adaptation and molecular evolution of specialized angiosperms. The liverwort Blasiapusilla, representing one of the basal clades of embryophytes, has been studied to identify thegenetic basis of traits that potentially led to the success of the embryophytes. In the present poster,we present the first draft assembly of the Blasia pusilla genome, based on single molecule readsequencing (PACBIO-SMRT). The draft genome has been assembled using 1,781,918 PacBio readsafter filtering contaminating organelle and symbiotic reads from a total of 1,997,826 sequencedreads. The genomeassembly and comparative assessment of various approaches for assembly will be presented.

AB - Comparative genomic information has been used to understand the key transitions of embryophyteevolution, such as terrestrialization resulting in various innovations driven by genetic changes.However, how these traits evolved is not yet understood, largely due to a paucity of informationfrom early divergent groups. In embryophytes, much of the focus has been on understandinggenetic adaptation and molecular evolution of specialized angiosperms. The liverwort Blasiapusilla, representing one of the basal clades of embryophytes, has been studied to identify thegenetic basis of traits that potentially led to the success of the embryophytes. In the present poster,we present the first draft assembly of the Blasia pusilla genome, based on single molecule readsequencing (PACBIO-SMRT). The draft genome has been assembled using 1,781,918 PacBio readsafter filtering contaminating organelle and symbiotic reads from a total of 1,997,826 sequencedreads. The genomeassembly and comparative assessment of various approaches for assembly will be presented.

KW - 1183 Plant biology, microbiology, virology

M3 - Poster

SP - 74

ER -

Sablok G, He X, Miranto MJ, Peltomaa E, Bell N, Paulin LG et al. The first draft genome of Blasia pusilla using SMRT sequencing. 2018. Poster presenterad vid EMBO Plant Evolution, Lisbon, Portugal.