Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding

Dmitry Antipov; Mikko Rautiainen; Sergey Nurk; Brian P. Walenz; Steven J. Solar; Adam M. Phillippy; Sergey Koren

doi:10.1101/gr.280383.124

Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding

Dmitry Antipov, Mikko Rautiainen, Sergey Nurk, Brian P. Walenz, Steven J. Solar, Adam M. Phillippy, Sergey Koren

Forskningsoutput: Tidskriftsbidrag › Artikel › Vetenskaplig › Peer review

Originalspråk	engelska
Tidskrift	Genome Research
Volym	35
Nummer	7
Sidor (från-till)	1583-1594
Antal sidor	12
ISSN	1088-9051
DOI	https://doi.org/10.1101/gr.280383.124
Status	Publicerad - juli 2025
MoE-publikationstyp	A1 Tidskriftsartikel-refererad

Vetenskapsgrenar

3111 Biomedicinska vetenskaper
1182 Biokemi, cell- och molekylärbiologi
1184 Genetik, utvecklingsbiologi, fysiologi

Åtkomst av dokument

10.1101/gr.280383.124

Andra filer och länkar

Link to publication in Scopus

Citera det här

@article{9b592b6dc70b436ab363c5889208306f,

title = "Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding",

keywords = "Satellite-i, Sequence, Dna, 3111 Biomedicine, 1182 Biochemistry, cell and molecular biology, 1184 Genetics, developmental biology, physiology",

author = "Dmitry Antipov and Mikko Rautiainen and Sergey Nurk and Walenz, \{Brian P.\} and Solar, \{Steven J.\} and Phillippy, \{Adam M.\} and Sergey Koren",

year = "2025",

month = jul,

doi = "10.1101/gr.280383.124",

language = "English",

volume = "35",

pages = "1583--1594",

journal = "Genome Research",

issn = "1088-9051",

publisher = "Cold Spring Harbor Laboratory Press",

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T1 - Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding

AU - Antipov, Dmitry

AU - Rautiainen, Mikko

AU - Nurk, Sergey

AU - Walenz, Brian P.

AU - Solar, Steven J.

AU - Phillippy, Adam M.

AU - Koren, Sergey

PY - 2025/7

Y1 - 2025/7

KW - Satellite-i

KW - Sequence

KW - Dna

KW - 3111 Biomedicine

KW - 1182 Biochemistry, cell and molecular biology

KW - 1184 Genetics, developmental biology, physiology

UR - https://www.scopus.com/pages/publications/105009798772

U2 - 10.1101/gr.280383.124

DO - 10.1101/gr.280383.124

M3 - Article

C2 - 40389285

SN - 1088-9051

VL - 35

SP - 1583

EP - 1594

JO - Genome Research

JF - Genome Research

IS - 7

ER -